RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NKAPLQ5M9Q1 402 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 ANGEL2Q5VTE6 544 aaKnown RBP9.77□□□□□ -0.85
NUP54-215ENST00000514313 SYTL4Q96C24 671 aaPredicted RBP9.77□□□□□ -0.85
NUP54-215ENST00000514313 SCYL1Q96KG9 808 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 ELF4Q99607 663 aaPredicted RBP9.77□□□□□ -0.85
NUP54-215ENST00000514313 POLR3GLQ9BT43 218 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 LUC7LQ9NQ29 371 aaKnown RBP9.77□□□□□ -0.85
NUP54-215ENST00000514313 IP6K2Q9UHH9 426 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 SRPK3Q9UPE1 567 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 LUC7L2Q9Y383 392 aaKnown RBP9.77□□□□□ -0.85
NUP54-215ENST00000514313 WASHC2AQ641Q2 1341 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 TGFB1P01137 390 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 ZGLP1P0C6A0 271 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 ZSCAN20P17040 1043 aaPredicted RBP9.76□□□□□ -0.85
NUP54-215ENST00000514313 KIR2DL1P43626 348 aaPredicted RBP9.76□□□□□ -0.85
NUP54-215ENST00000514313 KIR2DL2P43627 348 aaPredicted RBP9.76□□□□□ -0.85
NUP54-215ENST00000514313 KIF11P52732 1056 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 CORO7P57737 925 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 PHC1P78364 1004 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 PCBP2Q15366 365 aaKnown RBP eCLIP9.76□□□□□ -0.85
NUP54-215ENST00000514313 MSMPQ1L6U9 139 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 RSPO4Q2I0M5 234 aaPredicted RBP9.76□□□□□ -0.85
NUP54-215ENST00000514313 HSF5Q4G112 596 aaPredicted RBP9.76□□□□□ -0.85
NUP54-215ENST00000514313 FIGNQ5HY92 759 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 FAM102BQ5T8I3 360 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 CPZQ66K79 652 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 TCEAL8Q8IYN2 117 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 LZTR1Q8N653 840 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 C1orf162Q8NEQ5 155 aaPredicted RBP9.76□□□□□ -0.85
NUP54-215ENST00000514313 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.76□□□□□ -0.85
NUP54-215ENST00000514313 JPH3Q8WXH2 748 aaPredicted RBP9.76□□□□□ -0.85
NUP54-215ENST00000514313 SLC13A1Q9BZW2 595 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 CD244Q9BZW8 370 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 PCIF1Q9H4Z3 704 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 TOMM22Q9NS69 142 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 IMPACTQ9P2X3 320 aa9.76□□□□□ -0.85
NUP54-215ENST00000514313 ARID4BQ4LE39 1312 aaPredicted RBP9.76□□□□□ -0.85
NUP54-215ENST00000514313 SCDO00767 359 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 HIP1RO75146 1068 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 TACR1P25103 407 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 SMAD3P84022 425 aaKnown RBP9.75□□□□□ -0.85
NUP54-215ENST00000514313 KCNMA1Q12791 1236 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 BNIP3Q12983 259 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 MLC1Q15049 377 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 SMAD2Q15796 467 aaKnown RBP9.75□□□□□ -0.85
NUP54-215ENST00000514313 RALGPS1Q5JS13 557 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 MROH9Q5TGP6 573 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 NXNQ6DKJ4 435 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 CEP128Q6ZU80 1094 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 RIOX2Q8IUF8 465 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 CMIPQ8IY22 773 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 NLGN2Q8NFZ4 835 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 TTC8Q8TAM2 541 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 ADAMTS10Q9H324 1103 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 TOPORSQ9NS56 1045 aaPredicted RBP9.75□□□□□ -0.85
NUP54-215ENST00000514313 SLAMF8Q9P0V8 285 aa9.75□□□□□ -0.85
NUP54-215ENST00000514313 RFPL1O75677 317 aa9.74□□□□□ -0.85
NUP54-215ENST00000514313 MSL3P1P0C860 447 aa9.74□□□□□ -0.85
NUP54-215ENST00000514313 RTP1P59025 263 aa9.74□□□□□ -0.85
NUP54-215ENST00000514313 RBM10P98175 930 aaKnown RBP9.74□□□□□ -0.85
NUP54-215ENST00000514313 UHMK1Q8TAS1 419 aaKnown RBP9.74□□□□□ -0.85
NUP54-215ENST00000514313 USP33Q8TEY7 942 aa9.74□□□□□ -0.85
NUP54-215ENST00000514313 MISP3Q96FF7 219 aa9.74□□□□□ -0.85
NUP54-215ENST00000514313 SLC6A20Q9NP91 592 aa9.74□□□□□ -0.85
NUP54-215ENST00000514313 DSEQ9UL01 958 aa9.74□□□□□ -0.85
NUP54-215ENST00000514313 LCHNA4D1U4 455 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 DYRK3O43781 588 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 LSP1P33241 339 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 RGL3Q3MIN7 710 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 CCSAPQ6IQ19 270 aaPredicted RBP9.73□□□□□ -0.85
NUP54-215ENST00000514313 RASSF3Q86WH2 238 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 MAGEB6Q8N7X4 407 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 ZMAT4Q9H898 229 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 B3GALT1Q9Y5Z6 326 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 TAF6LQ9Y6J9 622 aa9.73□□□□□ -0.85
NUP54-215ENST00000514313 PEX14O75381 377 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 SNUPNO95149 360 aaKnown RBP9.72□□□□□ -0.85
NUP54-215ENST00000514313 CCND1P24385 295 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 PTX3P26022 381 aaPredicted RBP9.72□□□□□ -0.85
NUP54-215ENST00000514313 SCAND1P57086 179 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 MVKQ03426 396 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 LRRC32Q14392 662 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 KIR3DS1Q14943 382 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 SEC23AQ15436 765 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 GPR158Q5T848 1215 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 ESRP1Q6NXG1 681 aaKnown RBP9.72□□□□□ -0.85
NUP54-215ENST00000514313 EP400NLQ6ZTU2 488 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 SLC51AQ86UW1 340 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 CCAR1Q8IX12 1150 aaKnown RBP9.72□□□□□ -0.85
NUP54-215ENST00000514313 ANKS4BQ8N8V4 417 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 ZNF610Q8N9Z0 462 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 DLG3Q92796 817 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 ASIC4Q96FT7 647 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 FAXDC2Q96IV6 333 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 ALPK1Q96QP1 1244 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 LMCD1Q9NZU5 365 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 TMEM59LQ9UK28 342 aa9.72□□□□□ -0.85
NUP54-215ENST00000514313 KRIT1O00522 736 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 CLASP2O75122 1294 aaKnown RBP9.71□□□□□ -0.86
NUP54-215ENST00000514313 H2AFYO75367 372 aaKnown RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms