RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CASP14P31944 242 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 SMCR8Q8TEV9 937 aaPredicted RBP14.35□□□□□ -0.11
USP40-208ENST00000450966 XAGE2Q96GT9 111 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 SPATA17Q96L03 361 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 CDC42BPGQ6DT37 1551 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 TULP2O00295 520 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 PFKFB1P16118 471 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 CCNA1P78396 465 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 TBL3Q12788 808 aaKnown RBP14.35□□□□□ -0.11
USP40-208ENST00000450966 RFWD2Q8NHY2 731 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 SEPT10Q9P0V9 454 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 TNNQ9UQP3 1299 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 XDHP47989 1333 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 ERVV-1B6SEH8 477 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 TLK2Q86UE8 772 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 GSDMAQ96QA5 445 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 ZFP69BQ9UJL9 534 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 ZBTB21Q9ULJ3 1066 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 KDRP35968 1356 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 POTEB3A0JP26 581 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 CUL4AQ13619 759 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 PREPLQ4J6C6 727 aaPredicted RBP14.34□□□□□ -0.11
USP40-208ENST00000450966 POTEBQ6S5H4 581 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 TMCO5AQ8N6Q1 288 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 ZKSCAN3Q9BRR0 538 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 SUCLA2Q9P2R7 463 aaPredicted RBP14.34□□□□□ -0.11
USP40-208ENST00000450966 RRAGAQ7L523 313 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 FHOD1Q9Y613 1164 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 NBPF26B4DH59 902 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 PPEF1O14829 653 aaPredicted RBP14.34□□□□□ -0.11
USP40-208ENST00000450966 DALRD3Q5D0E6 543 aaKnown RBP14.34□□□□□ -0.11
USP40-208ENST00000450966 BRINP3Q76B58 766 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 NBPF15Q8N660 670 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.34□□□□□ -0.11
USP40-208ENST00000450966 CFAP36Q96G28 342 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 NRDE2Q9H7Z3 1164 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 RIC8AQ9NPQ8 531 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 ANO9A1A5B4 782 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 ZBBXA8MT70 800 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 MAN1A1P33908 653 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 PMS1P54277 932 aaKnown RBP14.34□□□□□ -0.11
USP40-208ENST00000450966 C1orf146Q5VVC0 180 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 TRIM74Q86UV6 250 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 TRIM73Q86UV7 250 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 OMA1Q96E52 524 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 PBKQ96KB5 322 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 HINFPQ9BQA5 517 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 LGR6Q9HBX8 967 aa14.34□□□□□ -0.11
USP40-208ENST00000450966 PYGBP11216 843 aa14.33□□□□□ -0.11
USP40-208ENST00000450966 RASSF3Q86WH2 238 aa14.33□□□□□ -0.11
USP40-208ENST00000450966 CCDC124Q96CT7 223 aaKnown RBP14.33□□□□□ -0.11
USP40-208ENST00000450966 FBXO2Q9UK22 296 aaPredicted RBP14.33□□□□□ -0.11
USP40-208ENST00000450966 ANGPTL3Q9Y5C1 460 aa14.33□□□□□ -0.11
USP40-208ENST00000450966 AFF2P51816 1311 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 PCP11498 1178 aaKnown RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 H2AFXP16104 143 aaPredicted RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 SERPINB1P30740 379 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 VHLP40337 213 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 ST13P50502 369 aaKnown RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 HAUS3Q68CZ6 603 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 SPATA5Q8NB90 893 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 UHMK1Q8TAS1 419 aaKnown RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 ZMYND12Q9H0C1 365 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 NFU1Q9UMS0 254 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 TRAF5O00463 557 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 FAM107AO95990 144 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 PDE4DQ08499 809 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 STX3Q13277 289 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 RETREG2Q8NC44 543 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 ASCC2Q9H1I8 757 aaPredicted RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 ADCY10Q96PN6 1610 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 ATP10DQ9P241 1426 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 PALM3A6NDB9 673 aaPredicted RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 PGRMC1O00264 195 aaKnown RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 SKAP2O75563 359 aaPredicted RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 CRKLP46109 303 aaKnown RBP14.33□□□□□ -0.12
USP40-208ENST00000450966 TRIM16LQ309B1 348 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 SPATA21Q7Z572 469 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 A0A1B0GW55 424 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 DUX4L2P0CJ85 424 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 DUX4L3P0CJ86 424 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 DUX4L4P0CJ87 422 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 DUX4L5P0CJ88 424 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 DUX4L6P0CJ89 424 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 DUX4L7P0CJ90 424 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 CPA1P15085 419 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 HORMAD1Q86X24 394 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 DUX4Q9UBX2 424 aa14.33□□□□□ -0.12
USP40-208ENST00000450966 NCAPD2Q15021 1401 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 USP27XA6NNY8 438 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 NOP56O00567 594 aaKnown RBP14.32□□□□□ -0.12
USP40-208ENST00000450966 STRNO43815 780 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 VIL1P09327 827 aaKnown RBP14.32□□□□□ -0.12
USP40-208ENST00000450966 RBL2Q08999 1139 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 NLRX1Q86UT6 975 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 PALM2Q8IXS6 379 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 BUB1O43683 1085 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 KBTBD12Q3ZCT8 623 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 FMO2Q99518 471 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 EXOC7Q9UPT5 735 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms