RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 MCUR1Q96AQ8 359 aa10.66□□□□□ -0.7
COL4A6-202ENST00000372216 CCDC68Q9H2F9 335 aa10.66□□□□□ -0.7
COL4A6-202ENST00000372216 RAVER2Q9HCJ3 691 aaKnown RBP10.66□□□□□ -0.7
COL4A6-202ENST00000372216 SPATA1Q5VX52 437 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 CACTINQ8WUQ7 758 aaKnown RBP10.65□□□□□ -0.7
COL4A6-202ENST00000372216 SLC7A5P2Q9GIP4 190 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 TMEM63CQ9P1W3 806 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 FEM1BQ9UK73 627 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 RPAP1Q9BWH6 1393 aaPredicted RBP10.65□□□□□ -0.7
COL4A6-202ENST00000372216 CLIC2O15247 247 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 PDZD4Q76G19 769 aaPredicted RBP10.65□□□□□ -0.7
COL4A6-202ENST00000372216 C17orf53Q8N3J3 647 aaPredicted RBP10.65□□□□□ -0.7
COL4A6-202ENST00000372216 N4BP2L2Q92802 583 aaPredicted RBP10.65□□□□□ -0.7
COL4A6-202ENST00000372216 NT5C1BQ96P26 610 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 PTPN22Q9Y2R2 807 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 PLEKHA8P1O95397 391 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 NR2F2P24468 414 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 CTTNQ14247 550 aaKnown RBP10.65□□□□□ -0.7
COL4A6-202ENST00000372216 PDXDC2PQ6P474 469 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 PODNQ7Z5L7 613 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 WHAMMQ8TF30 809 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 ERO1AQ96HE7 468 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 FANCLQ9NW38 375 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 CAPN15O75808 1086 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 PTPREP23469 700 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 GTF2A1P52655 376 aaPredicted RBP10.65□□□□□ -0.7
COL4A6-202ENST00000372216 NR5A1Q13285 461 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 PKP1Q13835 747 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 SLC39A14Q15043 492 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 ZBTB41Q5SVQ8 909 aa10.65□□□□□ -0.7
COL4A6-202ENST00000372216 FAM196BA6NMK8 535 aa10.65□□□□□ -0.71
COL4A6-202ENST00000372216 KCNK3O14649 394 aa10.65□□□□□ -0.71
COL4A6-202ENST00000372216 POLR2BP30876 1174 aaKnown RBP10.65□□□□□ -0.71
COL4A6-202ENST00000372216 NSFP46459 744 aaKnown RBP10.65□□□□□ -0.71
COL4A6-202ENST00000372216 GUCY2FP51841 1108 aa10.65□□□□□ -0.71
COL4A6-202ENST00000372216 LGSNQ5TDP6 509 aa10.65□□□□□ -0.71
COL4A6-202ENST00000372216 CCDC62Q6P9F0 684 aa10.65□□□□□ -0.71
COL4A6-202ENST00000372216 MRPL46Q9H2W6 279 aaKnown RBP10.65□□□□□ -0.71
COL4A6-202ENST00000372216 LAMC1P11047 1609 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 ABCA9Q8IUA7 1624 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 SNAP23O00161 211 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 CHRNA5P30532 468 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 RFX6Q8HWS3 928 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 ATP6V1E2Q96A05 226 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 STRBPQ96SI9 672 aaKnown RBP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 DNAJC5Q9H3Z4 198 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 MROH7-TTC4A0A0A0MT08 1334 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 NEDD4P46934 1319 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 ABCA6Q8N139 1617 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 CYP2E1P05181 493 aaPredicted RBP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 KIF23Q02241 960 aaPredicted RBP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 PTK2Q05397 1052 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 VPS72Q15906 364 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 SLFNL1Q499Z3 407 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 SCARA5Q6ZMJ2 495 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 SMIM5Q71RC9 77 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 GCNAQ96QF7 691 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 TMEM206Q9H813 350 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 HOXC10Q9NYD6 342 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 A6NJR5 290 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 NVLO15381 856 aaKnown RBP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 SRGAP2CP0DJJ0 459 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 ADCY1Q08828 1119 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 NFIXQ14938 502 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 HABP4Q5JVS0 413 aaKnown RBP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 STAG1Q8WVM7 1258 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 EXT2Q93063 718 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 ARHGAP42A6NI28 874 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 COPB1P53618 953 aaKnown RBP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 TFAMQ00059 246 aaKnown RBP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 FAM186BQ8IYM0 893 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 GRK7Q8WTQ7 553 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 SPATA31A6Q5VVP1 1343 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 C1orf167Q5SNV9 1468 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 AFPP02771 609 aaKnown RBP10.64□□□□□ -0.71
COL4A6-202ENST00000372216 DYNLT1P63172 113 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 ANGPTL8Q6UXH0 198 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 HAUS1Q96CS2 278 aa10.64□□□□□ -0.71
COL4A6-202ENST00000372216 PCK1P35558 622 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 PAK2Q13177 524 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 SP8Q8IXZ3 490 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 EEF2KMTQ96G04 330 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 FAM8A1Q9UBU6 413 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 SMYD4Q8IYR2 804 aaPredicted RBP10.63□□□□□ -0.71
COL4A6-202ENST00000372216 GRAMD1CQ8IYS0 662 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 F5H423 210 aaPredicted RBP10.63□□□□□ -0.71
COL4A6-202ENST00000372216 H7C0C1 242 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 PLA2G4BP0C869 781 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 ABCD1P33897 745 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 ATP5OP48047 213 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 RC3H1Q5TC82 1133 aaKnown RBP10.63□□□□□ -0.71
COL4A6-202ENST00000372216 RINT1Q6NUQ1 792 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 DESI2Q9BSY9 194 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 RAB17Q9H0T7 212 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 SNRNP48Q6IEG0 339 aaKnown RBP10.63□□□□□ -0.71
COL4A6-202ENST00000372216 PPFIBP2Q8ND30 876 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 TRIM58Q8NG06 486 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 CCDC94Q9BW85 323 aaPredicted RBP10.63□□□□□ -0.71
COL4A6-202ENST00000372216 FAM49AQ9H0Q0 323 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms