RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 TEKT3Q9BXF9 490 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 TRIM6Q9C030 488 aaPredicted RBP17.25■□□□□ 0.35
COL17A1-202ENST00000369733 MAPK13O15264 365 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 GCFC2P16383 781 aaKnown RBP17.25■□□□□ 0.35
COL17A1-202ENST00000369733 ASPRV1Q53RT3 343 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 CDCA7Q9BWT1 371 aaPredicted RBP17.25■□□□□ 0.35
COL17A1-202ENST00000369733 PSD3Q9NYI0 1048 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 THRAP3Q9Y2W1 955 aaKnown RBP17.25■□□□□ 0.35
COL17A1-202ENST00000369733 SNX24Q9Y343 169 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 PNPLA6Q8IY17 1366 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 EXOC1LA0A1B0GW35 172 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 LIG4P49917 911 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 AOC3Q16853 763 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 XKR9Q5GH70 373 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 TTBK2Q6IQ55 1244 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 NSMFQ6X4W1 530 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 GABPB2Q8TAK5 448 aaPredicted RBP17.24■□□□□ 0.35
COL17A1-202ENST00000369733 RNF34Q969K3 372 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 MMS19Q96T76 1030 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 POLR2MP0CAP2 368 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 GUCY1A3Q02108 690 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 TARBP1Q13395 1621 aaKnown RBP17.24■□□□□ 0.35
COL17A1-202ENST00000369733 GRID2IPA4D2P6 1211 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 PRPF6O94906 941 aaKnown RBP17.24■□□□□ 0.35
COL17A1-202ENST00000369733 PLA2G4BP0C869 781 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 KCNG1Q9UIX4 513 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 A0A1B0GTH6 734 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 MSH2P43246 934 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 GTF2IP78347 998 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 RASGRF1Q13972 1273 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 SAAL1Q96ER3 474 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 CCNL1Q9UK58 526 aaPredicted RBP17.24■□□□□ 0.35
COL17A1-202ENST00000369733 ROBO2Q9HCK4 1378 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 MADDQ8WXG6 1647 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 SCYL2Q6P3W7 929 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 DEPTORQ8TB45 409 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 UBE2TQ9NPD8 197 aaPredicted RBP17.24■□□□□ 0.35
COL17A1-202ENST00000369733 SEC31BQ9NQW1 1179 aa17.24■□□□□ 0.35
COL17A1-202ENST00000369733 DIS3Q9Y2L1 958 aaKnown RBP17.24■□□□□ 0.35
COL17A1-202ENST00000369733 MEIS1O00470 390 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 DBN1Q16643 649 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 UNC13DQ70J99 1090 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 TRIM11Q96F44 468 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 PITPNM3Q9BZ71 974 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 PFDN4Q9NQP4 134 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 FOSP01100 380 aaPredicted RBP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 EXOSC10Q01780 885 aaKnown RBP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 FMR1Q06787 632 aaKnown RBP eCLIP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 SPATA4Q8NEY3 305 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 TAF1DQ9H5J8 278 aaPredicted RBP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 TRPC6Q9Y210 931 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 USP42Q9H9J4 1324 aaKnown RBP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 hCG_1984214I3L0E3 225 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 BPIFB4P59827 614 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 FBXW10Q5XX13 1052 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 RASGRP2Q7LDG7 609 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 TRIM42Q8IWZ5 723 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 ZNF713Q8N859 430 aaPredicted RBP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 COA7Q96BR5 231 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 AZI2Q9H6S1 392 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 SH3GLB2Q9NR46 395 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 DNAJC17Q9NVM6 304 aaKnown RBP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 MAD1L1Q9Y6D9 718 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 LOC102724159A0A0B4J2E5 919 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 PODXLO00592 558 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 MEFVO15553 781 aaPredicted RBP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 PWP2Q15269 919 aaKnown RBP17.23■□□□□ 0.35
COL17A1-202ENST00000369733 NLRX1Q86UT6 975 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 LRRC1Q9BTT6 524 aa17.23■□□□□ 0.35
COL17A1-202ENST00000369733 A0A1W2PQC6 194 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 DIXDC1Q155Q3 683 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 MUM1L1Q5H9M0 696 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 ANGPTL2Q9UKU9 493 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 SLC12A2P55011 1212 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 PPP4R3CPQ6ZMV5 832 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 HAUS1Q96CS2 278 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 SLFN13Q68D06 897 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 CHURC1Q8WUH1 139 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 THEGQ9P2T0 379 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 INTUQ9ULD6 942 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 CAPN11Q9UMQ6 739 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 WDR91A4D1P6 747 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 GIPC1O14908 333 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 ARHGAP4P98171 946 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 TC2NQ8N9U0 490 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 CDC42BPBQ9Y5S2 1711 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 EFCAB6Q5THR3 1501 aa17.22■□□□□ 0.35
COL17A1-202ENST00000369733 ZNF185O15231 689 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 EIF3HO15372 352 aaKnown RBP eCLIP17.21■□□□□ 0.35
COL17A1-202ENST00000369733 CA4P22748 312 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 DMP1Q13316 513 aaPredicted RBP17.21■□□□□ 0.35
COL17A1-202ENST00000369733 RUBCNQ92622 972 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 HPCAL4Q9UM19 191 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 DCTN3O75935 186 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 PIK3CAP42336 1068 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 PPP2R5CQ13362 524 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 THOC1Q96FV9 657 aaKnown RBP17.21■□□□□ 0.35
COL17A1-202ENST00000369733 YIPF3Q9GZM5 350 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 ZBED4O75132 1171 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 MT-ND3P03897 115 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms