RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 AIFM3Q96NN9 605 aa21.85■■□□□ 1.09
SYNE4-202ENST00000340477 KCNH7Q9NS40 1196 aa21.85■■□□□ 1.09
SYNE4-202ENST00000340477 TCEAL9Q9UHQ7 104 aa21.85■■□□□ 1.09
SYNE4-202ENST00000340477 NOD1Q9Y239 953 aa21.85■■□□□ 1.09
SYNE4-202ENST00000340477 KIAA0355O15063 1070 aa21.84■■□□□ 1.09
SYNE4-202ENST00000340477 CTDNEP1O95476 244 aa21.84■■□□□ 1.09
SYNE4-202ENST00000340477 CYP3A4P08684 503 aa21.84■■□□□ 1.09
SYNE4-202ENST00000340477 HOXD8P13378 290 aaPredicted RBP21.84■■□□□ 1.09
SYNE4-202ENST00000340477 KCNA2P16389 499 aa21.84■■□□□ 1.09
SYNE4-202ENST00000340477 MDM2Q00987 491 aaPredicted RBP21.84■■□□□ 1.09
SYNE4-202ENST00000340477 C7orf31Q8N865 590 aa21.84■■□□□ 1.09
SYNE4-202ENST00000340477 ZNF215Q9UL58 517 aaPredicted RBP21.84■■□□□ 1.09
SYNE4-202ENST00000340477 GRIN2DO15399 1336 aa21.83■■□□□ 1.09
SYNE4-202ENST00000340477 F2P00734 622 aa21.83■■□□□ 1.09
SYNE4-202ENST00000340477 PSEN2P49810 448 aa21.83■■□□□ 1.09
SYNE4-202ENST00000340477 MFSD10Q14728 455 aa21.83■■□□□ 1.09
SYNE4-202ENST00000340477 KRT25Q7Z3Z0 450 aa21.83■■□□□ 1.09
SYNE4-202ENST00000340477 PLA2G4DQ86XP0 818 aa21.83■■□□□ 1.09
SYNE4-202ENST00000340477 CCDC83Q8IWF9 413 aa21.83■■□□□ 1.09
SYNE4-202ENST00000340477 LLPHQ9BRT6 129 aaKnown RBP21.83■■□□□ 1.09
SYNE4-202ENST00000340477 UBE2OQ9C0C9 1292 aaKnown RBP21.83■■□□□ 1.09
SYNE4-202ENST00000340477 JPH1Q9HDC5 661 aaPredicted RBP21.83■■□□□ 1.09
SYNE4-202ENST00000340477 COLQQ9Y215 455 aaPredicted RBP21.83■■□□□ 1.09
SYNE4-202ENST00000340477 CCDC194A0A1B0GVG4 234 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 TRIM43BA6NCK2 446 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 MEIS1O00470 390 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 NONOQ15233 471 aaKnown RBP eCLIP21.82■■□□□ 1.08
SYNE4-202ENST00000340477 KIAA0753Q2KHM9 967 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 SH3RF1Q7Z6J0 888 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 TRIM43Q96BQ3 446 aaPredicted RBP21.82■■□□□ 1.08
SYNE4-202ENST00000340477 GPR20Q99678 358 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 GDF15Q99988 308 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 PHF20Q9BVI0 1012 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 BACH2Q9BYV9 841 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 TBX21Q9UL17 535 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 KCNJ14Q9UNX9 436 aa21.82■■□□□ 1.08
SYNE4-202ENST00000340477 NFASCO94856 1347 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 A0A1W2PPC1 479 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 B4GALT4O60513 344 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 ATP9AO75110 1047 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 CD4P01730 458 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 LGALS2P05162 132 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 BMP8BP34820 402 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 MCM2P49736 904 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 USP11P51784 963 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 HMGN5P82970 282 aaKnown RBP21.81■■□□□ 1.08
SYNE4-202ENST00000340477 CYP2W1Q8TAV3 490 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 KAT2BQ92831 832 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 TRPV6Q9H1D0 765 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 AGO4Q9HCK5 861 aaKnown RBP21.81■■□□□ 1.08
SYNE4-202ENST00000340477 SLC9A2Q9UBY0 812 aa21.81■■□□□ 1.08
SYNE4-202ENST00000340477 FAM86B1E9PN63 330 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 JAK2O60674 1132 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 TIMP1P01033 207 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 FAM86B2P0C5J1 330 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 ARP10275 920 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 KRT2P35908 639 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 UTP14CQ5TAP6 766 aaKnown RBP21.8■■□□□ 1.08
SYNE4-202ENST00000340477 SESTD1Q86VW0 696 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 CCDC155Q8N6L0 562 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 TBCKQ8TEA7 893 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 CRYGNQ8WXF5 182 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 SEPT1Q8WYJ6 367 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 BADQ92934 168 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 ZNF577Q9BSK1 485 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 HIPK3Q9H422 1215 aa21.8■■□□□ 1.08
SYNE4-202ENST00000340477 TRMT13Q9NUP7 481 aaKnown RBP21.8■■□□□ 1.08
SYNE4-202ENST00000340477 H3BRB1 525 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 ADAMTS3O15072 1205 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 CIITAP33076 1130 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 TCF7P36402 384 aaPredicted RBP21.79■■□□□ 1.08
SYNE4-202ENST00000340477 FPGSQ05932 587 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 PRR16Q569H4 304 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 FAM184AQ8NB25 1140 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 PPP1R12CQ9BZL4 782 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 TUT1Q9H6E5 874 aaKnown RBP21.79■■□□□ 1.08
SYNE4-202ENST00000340477 BCAS3Q9H6U6 928 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 KIF3AQ9Y496 699 aa21.79■■□□□ 1.08
SYNE4-202ENST00000340477 IPO5O00410 1097 aaKnown RBP21.78■■□□□ 1.08
SYNE4-202ENST00000340477 FDPSP14324 419 aaKnown RBP21.78■■□□□ 1.08
SYNE4-202ENST00000340477 SAFBQ15424 915 aaKnown RBP eCLIP21.78■■□□□ 1.08
SYNE4-202ENST00000340477 PTGISQ16647 500 aa21.78■■□□□ 1.08
SYNE4-202ENST00000340477 TMEM199Q8N511 208 aa21.78■■□□□ 1.08
SYNE4-202ENST00000340477 C16orf70Q9BSU1 422 aa21.78■■□□□ 1.08
SYNE4-202ENST00000340477 AZI2Q9H6S1 392 aa21.78■■□□□ 1.08
SYNE4-202ENST00000340477 TBC1D22BQ9NU19 505 aa21.78■■□□□ 1.08
SYNE4-202ENST00000340477 IGLV3-22A0A075B6J6 115 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 M0R2N6 131 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 HAS3O00219 553 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 DTNBO60941 627 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 FOSBP53539 338 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 ST3GAL1Q11201 340 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 PPIGQ13427 754 aaKnown RBP eCLIP21.77■■□□□ 1.086e-8■□□□□ 9.1
SYNE4-202ENST00000340477 NPY5RQ15761 445 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 MFSD5Q6N075 450 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 GLG1Q92896 1179 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 NAP1L4Q99733 375 aaKnown RBP21.77■■□□□ 1.08
SYNE4-202ENST00000340477 HDAC6Q9UBN7 1215 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 GTF2IRD1Q9UHL9 959 aa21.77■■□□□ 1.08
SYNE4-202ENST00000340477 DDX39AO00148 427 aaKnown RBP21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms