RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TTLL11Q8NHH1 800 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 SNX25Q9H3E2 840 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 CACYBPQ9HB71 228 aaKnown RBP12.44□□□□□ -0.42
USP53-201ENST00000274030 SLC38A10Q9HBR0 1119 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 PI4KBQ9UBF8 816 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 ERBB3P21860 1342 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 KRT1P04264 644 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 MCAMP43121 646 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 PRPF31Q8WWY3 499 aaKnown RBP12.43□□□□□ -0.42
USP53-201ENST00000274030 RABGGTAQ92696 567 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 NHEJ1Q9H9Q4 299 aaPredicted RBP12.43□□□□□ -0.42
USP53-201ENST00000274030 PPME1Q9Y570 386 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 KIF3CO14782 793 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 IKBKBO14920 756 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 ZNF853P0CG23 659 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 SERPINB6P35237 376 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 KIF11P52732 1056 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 SLC12A1Q13621 1099 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 MUM1L1Q5H9M0 696 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 RETREG2Q8NC44 543 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 BHMT2Q9H2M3 363 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 FAM196BA6NMK8 535 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 OPHN1O60890 802 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 GCFC2P16383 781 aaKnown RBP12.43□□□□□ -0.42
USP53-201ENST00000274030 RNASELQ05823 741 aaKnown RBP12.43□□□□□ -0.42
USP53-201ENST00000274030 IFT88Q13099 833 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 CUL4AQ13619 759 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 PIGOQ8TEQ8 1089 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 AP1M1Q9BXS5 423 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 ATP10DQ9P241 1426 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 VGLL3A8MV65 326 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 PRPF3O43395 683 aaKnown RBP12.43□□□□□ -0.42
USP53-201ENST00000274030 CCNA1P78396 465 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 IL1RL1Q01638 556 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 MAP7Q14244 749 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 TMED2Q15363 201 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 PDXDC2PQ6P474 469 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 NLRP4Q96MN2 994 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 AP5M1Q9H0R1 490 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 PARVGQ9HBI0 331 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 RESTQ13127 1097 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 DBN1Q16643 649 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 EPHA10Q5JZY3 1008 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 OR6B2Q6IFH4 312 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 BBOF1Q8ND07 529 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 ANAPC5Q9UJX4 755 aa12.43□□□□□ -0.42
USP53-201ENST00000274030 ROBO2Q9HCK4 1378 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 MXI1P50539 228 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 CCDC93Q567U6 631 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 CHMP6Q96FZ7 201 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 RAB3IPQ96QF0 476 aaPredicted RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 ADD3Q9UEY8 706 aaKnown RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 SRPRBQ9Y5M8 271 aaKnown RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 PRR36Q9H6K5 1346 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 HEG1Q9ULI3 1381 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 USP14P54578 494 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 ASPHQ12797 758 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 PHLDB3Q6NSJ2 640 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 DNAJC24Q6P3W2 148 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 GDAQ9Y2T3 454 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 PGRMC1O00264 195 aaKnown RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 GARSP41250 739 aaKnown RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 NECTIN1Q15223 517 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 SH3RF3Q8TEJ3 882 aaPredicted RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 TRIM56Q9BRZ2 755 aaKnown RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 MED4Q9NPJ6 270 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 ADAMTS1Q9UHI8 967 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 AATKQ6ZMQ8 1374 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 LRRD1A4D1F6 860 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 CCND2P30279 289 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 DHX9Q08211 1270 aaKnown RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 PRPSAP1Q14558 356 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 ARID5BQ14865 1188 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 ZNF394Q53GI3 561 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 STK17AQ9UEE5 414 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 RWDD2AQ9UIY3 292 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 PNMA2Q9UL42 364 aa12.42□□□□□ -0.42
USP53-201ENST00000274030 G3BP2Q9UN86 482 aaKnown RBP12.42□□□□□ -0.42
USP53-201ENST00000274030 WDR91A4D1P6 747 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 CCNE1P24864 410 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 SUPT20HL1Q3ZLR7 823 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 DARS2Q6PI48 645 aaKnown RBP12.41□□□□□ -0.42
USP53-201ENST00000274030 ZNF341Q9BYN7 854 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 ABCF3Q9NUQ8 709 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 CPSF2Q9P2I0 782 aaKnown RBP12.41□□□□□ -0.42
USP53-201ENST00000274030 BCAP29Q9UHQ4 241 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 FAN1Q9Y2M0 1017 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 CLGNO14967 610 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 GH2P01242 217 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 PRDX5P30044 214 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 KCTD6Q8NC69 237 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 XPOTO43592 962 aaKnown RBP12.41□□□□□ -0.42
USP53-201ENST00000274030 C21orf2O43822 256 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 ECEL1O95672 775 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 OSBPP22059 807 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 CDO1Q16878 200 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 ATP6V1E2Q96A05 226 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 GBP5Q96PP8 586 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 FAM49AQ9H0Q0 323 aaPredicted RBP12.41□□□□□ -0.42
USP53-201ENST00000274030 TMEM206Q9H813 350 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms