RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 GBA2Q9HCG7 927 aaPredicted RBP18.84■□□□□ 0.61
LDLR-206ENST00000557958 PVALEFA0A1B0GWK0 134 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 FDX1P10109 184 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 MKRN3Q13064 507 aaKnown RBP18.84■□□□□ 0.61
LDLR-206ENST00000557958 CDKAL1Q5VV42 579 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 ADSSL1Q8N142 457 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 C2orf69Q8N8R5 385 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 ETNPPLQ8TBG4 499 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 RBM46Q8TBY0 533 aaKnown RBP18.84■□□□□ 0.61
LDLR-206ENST00000557958 PNMA5Q96PV4 448 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 MED15Q96RN5 788 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 SAMSN1Q9NSI8 373 aaKnown RBP18.84■□□□□ 0.61
LDLR-206ENST00000557958 CCPG1Q9ULG6 757 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 PYCARDQ9ULZ3 195 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 BICDL2A1A5D9 508 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 PRCPP42785 496 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 PDE4DQ08499 809 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 LRMPQ12912 555 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 CHADLQ6NUI6 762 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 FCHSD1Q86WN1 690 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 MCF2L2Q86YR7 1114 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 DHTKD1Q96HY7 919 aaPredicted RBP18.83■□□□□ 0.6
LDLR-206ENST00000557958 GPBP1L1Q9HC44 474 aaPredicted RBP18.83■□□□□ 0.6
LDLR-206ENST00000557958 BMP2KQ9NSY1 1161 aaPredicted RBP18.83■□□□□ 0.6
LDLR-206ENST00000557958 BLOC1S4Q9NUP1 217 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 GDAQ9Y2T3 454 aa18.83■□□□□ 0.6
LDLR-206ENST00000557958 SPDYE5A6NIY4 337 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 SKILP12757 684 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 SAMD3Q8N6K7 520 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 LRRC15Q8TF66 581 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 AGBL1Q96MI9 1066 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 RAVER2Q9HCJ3 691 aaKnown RBP18.82■□□□□ 0.6
LDLR-206ENST00000557958 MCM6Q14566 821 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 COBLL1Q53SF7 1204 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 HSP90AA4PQ58FG1 418 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 DNTTIP2Q5QJE6 756 aaKnown RBP18.82■□□□□ 0.6
LDLR-206ENST00000557958 TREML2Q5T2D2 321 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 LDLRAD1Q5T700 205 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 UNC13DQ70J99 1090 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 CCDC112Q8NEF3 446 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 NOC3LQ8WTT2 800 aaKnown RBP18.82■□□□□ 0.6
LDLR-206ENST00000557958 PPP1R9AQ9ULJ8 1098 aa18.82■□□□□ 0.6
LDLR-206ENST00000557958 A0A1B0GTH6 734 aa18.81■□□□□ 0.6
LDLR-206ENST00000557958 ZBED4O75132 1171 aa18.81■□□□□ 0.6
LDLR-206ENST00000557958 SPECC1LQ69YQ0 1117 aa18.81■□□□□ 0.6
LDLR-206ENST00000557958 KCTD17Q8N5Z5 321 aa18.81■□□□□ 0.6
LDLR-206ENST00000557958 ATG4CQ96DT6 458 aa18.81■□□□□ 0.6
LDLR-206ENST00000557958 C12orf42Q96LP6 360 aa18.81■□□□□ 0.6
LDLR-206ENST00000557958 P2RX7Q99572 595 aaKnown RBP18.81■□□□□ 0.6
LDLR-206ENST00000557958 FAM86B1E9PN63 330 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 FAM86B2P0C5J1 330 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 COG2Q14746 738 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 LENG9Q96B70 501 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 WNK4Q96J92 1243 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 HOMER2Q9NSB8 354 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 MAP3K20Q9NYL2 800 aaKnown RBP18.8■□□□□ 0.6
LDLR-206ENST00000557958 SETQ01105 290 aaPredicted RBP18.8■□□□□ 0.6
LDLR-206ENST00000557958 PSMD2Q13200 908 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 PPIL2Q13356 520 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 SH3D19Q5HYK7 790 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 CATSPERGQ6ZRH7 1159 aa18.8■□□□□ 0.6
LDLR-206ENST00000557958 OTOFQ9HC10 1997 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 MYMKA6NI61 221 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 CXCL11O14625 94 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 ITGBL1O95965 494 aaPredicted RBP18.79■□□□□ 0.6
LDLR-206ENST00000557958 ALAS1P13196 640 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 HSD17B4P51659 736 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 CST9Q5W186 159 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 TRIM47Q96LD4 638 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 NUDT12Q9BQG2 462 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 THAP9Q9H5L6 903 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 SLC38A10Q9HBR0 1119 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 MAPK8IP1Q9UQF2 711 aa18.79■□□□□ 0.6
LDLR-206ENST00000557958 VWA5AO00534 786 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 MSH4O15457 936 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 GJA5P36382 358 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 HSP90AA2PQ14568 343 aaPredicted RBP18.78■□□□□ 0.6
LDLR-206ENST00000557958 PLS1Q14651 629 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 NR1I3Q14994 352 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 NCAPH2Q6IBW4 605 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 FAM114A1Q8IWE2 563 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 INTS13Q9NVM9 706 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 MAGEC2Q9UBF1 373 aaPredicted RBP18.78■□□□□ 0.6
LDLR-206ENST00000557958 LIMA1Q9UHB6 759 aaKnown RBP18.78■□□□□ 0.6
LDLR-206ENST00000557958 KIAA1024Q9UPX6 916 aa18.78■□□□□ 0.6
LDLR-206ENST00000557958 A0A0G2JLL6 359 aaPredicted RBP18.77■□□□□ 0.6
LDLR-206ENST00000557958 CCNE1P24864 410 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 EEF1GP26641 437 aaKnown RBP18.77■□□□□ 0.6
LDLR-206ENST00000557958 RPA1P27694 616 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 DSG3P32926 999 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 KCNJ6P48051 423 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 CCZ1BP86790 482 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 CCZ1P86791 482 aaPredicted RBP18.77■□□□□ 0.6
LDLR-206ENST00000557958 SPIRE1Q08AE8 756 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 ARMCX5Q6P1M9 558 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 PRRT2Q7Z6L0 340 aaPredicted RBP18.77■□□□□ 0.6
LDLR-206ENST00000557958 TBC1D5Q92609 795 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 DDX12PQ92771 950 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 GJA10Q969M2 543 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 HOXC10Q9NYD6 342 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms