RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SH3RF3Q8TEJ3 882 aaPredicted RBP19.36■□□□□ 0.69
SYNE3-202ENST00000553340 MTMR9Q96QG7 549 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 RAB34Q9BZG1 259 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 BIN2Q9UBW5 565 aaPredicted RBP19.36■□□□□ 0.69
SYNE3-202ENST00000553340 ZNF233A6NK53 670 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 ZEB2O60315 1214 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 KIAA0754O94854 1291 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 FAM153BP0C7A2 387 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 FAM153CQ494X1 144 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 CD302Q8IX05 232 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 FAM153AQ9UHL3 310 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 ESYT3A0FGR9 886 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 NAB2Q15742 525 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 TMC4Q7Z404 712 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 RAD54LQ92698 747 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 ZNF287Q9HBT7 754 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 RASA1P20936 1047 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 SLC10A5Q5PT55 438 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 FAM83BQ5T0W9 1011 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 EMC10Q5UCC4 262 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 MCTP2Q6DN12 878 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 WHAMMQ8TF30 809 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 DDX12PQ92771 950 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 RNPC3Q96LT9 517 aaKnown RBP19.35■□□□□ 0.69
SYNE3-202ENST00000553340 COL4A3BPQ9Y5P4 624 aa19.35■□□□□ 0.69
SYNE3-202ENST00000553340 ZSCAN5CA6NGD5 496 aaPredicted RBP19.34■□□□□ 0.69
SYNE3-202ENST00000553340 BAG3O95817 575 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 LDHBP07195 334 aaKnown RBP19.34■□□□□ 0.69
SYNE3-202ENST00000553340 DNA2P51530 1060 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 FKBP3Q00688 224 aaKnown RBP19.34■□□□□ 0.69
SYNE3-202ENST00000553340 LRRC41Q15345 812 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 CCDC40Q4G0X9 1142 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 BICDL1Q6ZP65 573 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 MYOCDQ8IZQ8 938 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 KRT12Q99456 494 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 VAT1LQ9HCJ6 419 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 FTCDO95954 541 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 LSP1P33241 339 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 USP8P40818 1118 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 GUCY2FP51841 1108 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 EPN3Q9H201 632 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 ATP6V0A2Q9Y487 856 aa19.34■□□□□ 0.69
SYNE3-202ENST00000553340 ESYT2A0FGR8 921 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 TLR2O60603 784 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 NR1D1P20393 614 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 SMARCA1P28370 1054 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 HSPA2P54652 639 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 IRX3P78415 501 aaPredicted RBP19.33■□□□□ 0.69
SYNE3-202ENST00000553340 EHHADHQ08426 723 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 PDE4CQ08493 712 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 PDIA5Q14554 519 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 MEI1Q5TIA1 1274 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 KRT79Q5XKE5 535 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 USP17L2Q6R6M4 530 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 MICALCLQ6ZW33 695 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 CERS3Q8IU89 383 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 OTUD6BQ8N6M0 293 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 SNX29Q8TEQ0 813 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 TGFBRAP1Q8WUH2 860 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 CEP89Q96ST8 783 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 TMEM260Q9NX78 707 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 PCDHGC5Q9Y5F6 944 aa19.33■□□□□ 0.69
SYNE3-202ENST00000553340 KLRC1P26715 233 aa19.33■□□□□ 0.68
SYNE3-202ENST00000553340 HNRNPH1P31943 449 aaKnown RBP19.33■□□□□ 0.68
SYNE3-202ENST00000553340 CDC37Q16543 378 aaPredicted RBP19.33■□□□□ 0.68
SYNE3-202ENST00000553340 SLC18A3Q16572 532 aa19.33■□□□□ 0.68
SYNE3-202ENST00000553340 SWT1Q5T5J6 900 aaKnown RBP19.33■□□□□ 0.68
SYNE3-202ENST00000553340 FBXW10Q5XX13 1052 aa19.33■□□□□ 0.68
SYNE3-202ENST00000553340 TXNRD3Q86VQ6 643 aa19.33■□□□□ 0.68
SYNE3-202ENST00000553340 C1orf131Q8NDD1 294 aaKnown RBP19.33■□□□□ 0.68
SYNE3-202ENST00000553340 CASKIN2Q8WXE0 1202 aa19.33■□□□□ 0.68
SYNE3-202ENST00000553340 PIK3R5Q8WYR1 880 aa19.33■□□□□ 0.68
SYNE3-202ENST00000553340 PIGSQ96S52 555 aa19.33■□□□□ 0.68
SYNE3-202ENST00000553340 TRAF5O00463 557 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 MEFVO15553 781 aaPredicted RBP19.32■□□□□ 0.68
SYNE3-202ENST00000553340 NOL4O94818 638 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 TNNC1P63316 161 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 COL14A1Q05707 1796 aaKnown RBP19.32■□□□□ 0.68
SYNE3-202ENST00000553340 GLIS3Q8NEA6 775 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 TBC1D5Q92609 795 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 ATP6V1G3Q96LB4 118 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 NLRP3Q96P20 1036 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 INPP4AQ96PE3 977 aaPredicted RBP19.32■□□□□ 0.68
SYNE3-202ENST00000553340 LSM14BQ9BX40 385 aaKnown RBP19.32■□□□□ 0.68
SYNE3-202ENST00000553340 POTEMA6NI47 508 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 POLR2FP61218 127 aaKnown RBP19.32■□□□□ 0.68
SYNE3-202ENST00000553340 GSTO1P78417 241 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 GUCY1A3Q02108 690 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 WDR66Q8TBY9 1149 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 EYA3Q99504 573 aa19.32■□□□□ 0.68
SYNE3-202ENST00000553340 HMGB1P1B2RPK0 211 aaPredicted RBP19.31■□□□□ 0.68
SYNE3-202ENST00000553340 ZPR1O75312 459 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 PPP1R37O75864 691 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 KIAA0753Q2KHM9 967 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 ZCWPW2Q504Y3 356 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.31■□□□□ 0.68
SYNE3-202ENST00000553340 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.31■□□□□ 0.68
SYNE3-202ENST00000553340 SAP30BPQ9UHR5 308 aaKnown RBP19.31■□□□□ 0.68
SYNE3-202ENST00000553340 CAPN7Q9Y6W3 813 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 SLC37A4O43826 429 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms