RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 NOC4LQ9BVI4 516 aaKnown RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 KCNMB3Q9NPA1 279 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 MYOZ2Q9NPC6 264 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 FAM207AQ9NSI2 230 aaPredicted RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 ADGRG1Q9Y653 693 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 ZNF646O15015 1829 aaPredicted RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 LGALS16A8MUM7 142 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 RSPH10B2B2RC85 870 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 TULP1O00294 542 aaPredicted RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 RSPH10BP0C881 870 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 CASP5P51878 434 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 CTTNQ14247 550 aaKnown RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 PDIA5Q14554 519 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 CNNM4Q6P4Q7 775 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 UNC13DQ70J99 1090 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 DNAJC19Q96DA6 116 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 PURBQ96QR8 312 aaKnown RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 SH2D3AQ9BRG2 576 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 CUEDC2Q9H467 287 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 PANK4Q9NVE7 773 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 RASSF10A6NK89 507 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 NFKBIEO00221 500 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 TRIM21P19474 475 aaKnown RBP12.35□□□□□ -0.43
CUX1-212ENST00000547394 PRELPP51888 382 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 PRKG1Q13976 671 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 HERC4Q5GLZ8 1057 aaPredicted RBP12.35□□□□□ -0.43
CUX1-212ENST00000547394 PPP4R3BQ5MIZ7 849 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 ETNPPLQ8TBG4 499 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 JDP2Q8WYK2 163 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 WDR18Q9BV38 432 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 TAOK3Q9H2K8 898 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 HERC5Q9UII4 1024 aaKnown RBP12.35□□□□□ -0.43
CUX1-212ENST00000547394 TMX2Q9Y320 296 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 ZSCAN12O43309 604 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 SPAG1Q07617 926 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 DALRD3Q5D0E6 543 aaKnown RBP12.35□□□□□ -0.43
CUX1-212ENST00000547394 CT47A1Q5JQC4 288 aaPredicted RBP12.35□□□□□ -0.43
CUX1-212ENST00000547394 MIIPQ5JXC2 388 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 CIAPIN1Q6FI81 312 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 ZNF507Q8TCN5 953 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 SMCR8Q8TEV9 937 aaPredicted RBP12.35□□□□□ -0.43
CUX1-212ENST00000547394 DHTKD1Q96HY7 919 aaPredicted RBP12.35□□□□□ -0.43
CUX1-212ENST00000547394 PANX2Q96RD6 677 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 CARD6Q9BX69 1037 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 STK17AQ9UEE5 414 aa12.35□□□□□ -0.43
CUX1-212ENST00000547394 PLEKP08567 350 aaPredicted RBP12.34□□□□□ -0.43
CUX1-212ENST00000547394 CAP2P40123 477 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 SPIRE1Q08AE8 756 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 ARSHQ5FYA8 562 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 PDCL2Q8N4E4 241 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 CRACR2AQ9BSW2 395 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 TANGO6Q9C0B7 1094 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 THAP9Q9H5L6 903 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 KCND1Q9NSA2 647 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 NPM3O75607 178 aaKnown RBP12.34□□□□□ -0.43
CUX1-212ENST00000547394 TPM1P09493 284 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 CCDC175P0C221 793 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 CNGA4Q8IV77 575 aa12.34□□□□□ -0.43
CUX1-212ENST00000547394 BMP2KQ9NSY1 1161 aaPredicted RBP12.34□□□□□ -0.43
CUX1-212ENST00000547394 SLU7O95391 586 aaKnown RBP12.33□□□□□ -0.44
CUX1-212ENST00000547394 MYL1P05976 194 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 SPATA31C1P0DKV0 1188 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 KSR1Q8IVT5 923 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 CRYGNQ8WXF5 182 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 BHMT2Q9H2M3 363 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 VCPKMTQ9H867 229 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 GOPCQ9HD26 462 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.33□□□□□ -0.448e-7■■□□□ 12.7
CUX1-212ENST00000547394 ABCB11O95342 1321 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 ARFGEF1Q9Y6D6 1849 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 TRAF5O00463 557 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 NFIBO00712 420 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 GCFC2P16383 781 aaKnown RBP12.33□□□□□ -0.44
CUX1-212ENST00000547394 CYP11B2P19099 503 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 CASQ1P31415 396 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 SREBF1P36956 1147 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 USP11P51784 963 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 CYP27A1Q02318 531 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 KCNA1Q09470 495 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 ENOX2Q16206 610 aaKnown RBP12.33□□□□□ -0.44
CUX1-212ENST00000547394 ZNF569Q5MCW4 686 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 FAM26FQ5R3K3 315 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 MAEAQ7L5Y9 396 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 LDHDQ86WU2 507 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 TPH2Q8IWU9 490 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 MICALL2Q8IY33 904 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 WNK4Q96J92 1243 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 MMRN2Q9H8L6 949 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 MAGEF1Q9HAY2 307 aa12.33□□□□□ -0.44
CUX1-212ENST00000547394 LUC7L2Q9Y383 392 aaKnown RBP12.33□□□□□ -0.44
CUX1-212ENST00000547394 ARP10275 920 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 EEF1GP26641 437 aaKnown RBP12.32□□□□□ -0.44
CUX1-212ENST00000547394 KCNJ6P48051 423 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 GMPSP49915 693 aaPredicted RBP12.32□□□□□ -0.44
CUX1-212ENST00000547394 NBPF12Q5TAG4 269 aaPredicted RBP12.32□□□□□ -0.44
CUX1-212ENST00000547394 CENPPQ6IPU0 288 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 WDR59Q6PJI9 974 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 ZKSCAN4Q969J2 545 aaPredicted RBP12.32□□□□□ -0.44
CUX1-212ENST00000547394 RUSC1Q9BVN2 902 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 BICDL2A1A5D9 508 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms