RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 POU5F1Q01860 360 aaKnown RBP5.82□□□□□ -1.48
USP28-213ENST00000544967 SPAG1Q07617 926 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 ALX1Q15699 326 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 PLEKHG6Q3KR16 790 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 ZNF569Q5MCW4 686 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 CYP26C1Q6V0L0 522 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 Q6ZUG5 572 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 ADGRA1Q86SQ6 560 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 SLC35F6Q8N357 371 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 OR8K1Q8NGG5 319 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 NUCKS1Q9H1E3 243 aaKnown RBP5.82□□□□□ -1.48
USP28-213ENST00000544967 SLC40A1Q9NP59 571 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 PAG1Q9NWQ8 432 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 CORO1CQ9ULV4 474 aaPredicted RBP5.82□□□□□ -1.48
USP28-213ENST00000544967 LRRC10BA6NIK2 292 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 NEBLO76041 1014 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 EGFRP00533 1210 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 RFX1P22670 979 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 EPS15P42566 896 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 PLCD1P51178 756 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 CCNG1P51959 295 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 GTF2IP78347 998 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 MDM2Q00987 491 aaPredicted RBP5.82□□□□□ -1.48
USP28-213ENST00000544967 MORC3Q14149 939 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 ZMYM1Q5SVZ6 1142 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 PPFIBP1Q86W92 1011 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 MFN1Q8IWA4 741 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 RSPH1Q8WYR4 309 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 RSPH9Q9H1X1 276 aaPredicted RBP5.82□□□□□ -1.48
USP28-213ENST00000544967 SYNPO2Q9UMS6 1093 aa5.82□□□□□ -1.48
USP28-213ENST00000544967 CASP8AP2Q9UKL3 1982 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 SMAPO00193 183 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 RIMBP2O15034 1052 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 LUC7L3O95232 432 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 NAT1P18440 290 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 ZAP70P43403 619 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 CLNS1AP54105 237 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 PDIA5Q14554 519 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 SBK1Q52WX2 424 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 LDLRAD1Q5T700 205 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 CDKAL1Q5VV42 579 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 NAA35Q5VZE5 725 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 LRIG3Q6UXM1 1119 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 RAD9BQ6WBX8 426 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 APTXQ7Z2E3 356 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 CCDC13Q8IYE1 715 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 DRAXINQ8NBI3 349 aaPredicted RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 TEKT1Q969V4 418 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 PURBQ96QR8 312 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 LARP6Q9BRS8 491 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 NMRK2Q9NPI5 230 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 RNF14Q9UBS8 474 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 ANAPC4Q9UJX5 808 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 HDAC9Q9UKV0 1011 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 A0A1B0GVL5 298 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 CFAP73A6NFT4 308 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 RASSF10A6NK89 507 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 TMEM232C9JQI7 657 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 PPP1R37O75864 691 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 RAD17O75943 681 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 LDHBP07195 334 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 FAM163BP0C2L3 166 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 PRDX5P30044 214 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 GABPAQ06546 454 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 TTC39AQ5SRH9 613 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 C1QTNF12Q5T7M4 302 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 CYB5D1Q6P9G0 228 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 FUKQ8N0W3 1084 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 TEX9Q8N6V9 391 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 DHX38Q92620 1227 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 SAAL1Q96ER3 474 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 MUC3BQ9H195 1237 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 SENP2Q9HC62 589 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 HELLSQ9NRZ9 838 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 FANCLQ9NW38 375 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 CPSF2Q9P2I0 782 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 CTNNAL1Q9UBT7 734 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 FAM198AQ9UFP1 575 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 DDX20Q9UHI6 824 aaKnown RBP5.81□□□□□ -1.48
USP28-213ENST00000544967 SAR1BQ9Y6B6 198 aa5.81□□□□□ -1.48
USP28-213ENST00000544967 BIN1O00499 593 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 PLCG2P16885 1265 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 PTGISQ16647 500 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 SPATA1Q5VX52 437 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 CDC42EP5Q6NZY7 148 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 NOP9Q86U38 636 aaKnown RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 NOA1Q8NC60 698 aaKnown RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 ZNF473Q8WTR7 871 aaKnown RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 DTNBP1Q96EV8 351 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 DDX27Q96GQ7 796 aaKnown RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 TSGA10Q9BZW7 698 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 SUGCTQ9HAC7 445 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 ZNF70Q9UC06 446 aaPredicted RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 ADD3Q9UEY8 706 aaKnown RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 NID2Q14112 1375 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 A0A0D9SFI3 127 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 H7C1D1 291 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 HSF2BPO75031 334 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 RHOXF2BP0C7M4 288 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 ALADP13716 330 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms