RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 GCOM1H8Y6P7 765 aaPredicted RBP16.38■□□□□ 0.21
SNHG1-213ENST00000540725 HAS3O00219 553 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 SGSM2O43147 1006 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 CYTH3O43739 400 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 SORBS3O60504 671 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 GGPS1O95749 300 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 POLR2MP0CAP2 368 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 HOXD8P13378 290 aaPredicted RBP16.38■□□□□ 0.21
SNHG1-213ENST00000540725 CCND2P30279 289 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 TROAPQ12815 778 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 CELF3Q5SZQ8 465 aaKnown RBP16.38■□□□□ 0.21
SNHG1-213ENST00000540725 MYSM1Q5VVJ2 828 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 FCHSD1Q86WN1 690 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 MICALL1Q8N3F8 863 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 MICAL3Q7RTP6 2002 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 PNMA6FA0A0J9YX94 578 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 KIF28PB7ZC32 967 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 CKBP12277 381 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 UBA1P22314 1058 aaKnown RBP16.37■□□□□ 0.21
SNHG1-213ENST00000540725 KCNJ6P48051 423 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 GPNMBQ14956 572 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 HSDL1Q3SXM5 330 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 SPATA33Q96N06 139 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 ASB2Q96Q27 587 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 CERS4Q9HA82 394 aa16.37■□□□□ 0.21
SNHG1-213ENST00000540725 COL4A4P53420 1690 aaPredicted RBP16.36■□□□□ 0.21
SNHG1-213ENST00000540725 RFXAPO00287 272 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 PPFIA4O75335 1185 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 ARHGEF15O94989 841 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 PARNO95453 639 aaKnown RBP16.36■□□□□ 0.21
SNHG1-213ENST00000540725 CXCL10P02778 98 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 TGFB3P10600 412 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 ANTXR2P58335 489 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 WDR5P61964 334 aaKnown RBP16.36■□□□□ 0.21
SNHG1-213ENST00000540725 IRX6P78412 446 aaPredicted RBP16.36■□□□□ 0.21
SNHG1-213ENST00000540725 MRPS5P82675 430 aaKnown RBP16.36■□□□□ 0.21
SNHG1-213ENST00000540725 SP2Q02086 613 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 TAP1Q03518 808 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 PTK7Q13308 1070 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 CNKSR3Q6P9H4 555 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 CATIPQ7Z7H3 387 aa16.36■□□□□ 0.21
SNHG1-213ENST00000540725 GPKOWQ92917 476 aaPredicted RBP eCLIP16.36■□□□□ 0.212e-31■■■□□ 17.2
SNHG1-213ENST00000540725 ZFP91Q96JP5 570 aaPredicted RBP16.36■□□□□ 0.21
SNHG1-213ENST00000540725 EPOPA6NHQ4 379 aa16.35■□□□□ 0.21
SNHG1-213ENST00000540725 TLL1O43897 1013 aa16.35■□□□□ 0.21
SNHG1-213ENST00000540725 NBNO60934 754 aa16.35■□□□□ 0.21
SNHG1-213ENST00000540725 ZNF200P98182 395 aaPredicted RBP16.35■□□□□ 0.21
SNHG1-213ENST00000540725 TRIM71Q2Q1W2 868 aaKnown RBP16.35■□□□□ 0.21
SNHG1-213ENST00000540725 MB21D2Q8IYB1 491 aaPredicted RBP16.35■□□□□ 0.21
SNHG1-213ENST00000540725 IGDCC4Q8TDY8 1250 aa16.35■□□□□ 0.21
SNHG1-213ENST00000540725 PIBF1Q8WXW3 757 aa16.35■□□□□ 0.21
SNHG1-213ENST00000540725 MAP4K1Q92918 833 aa16.35■□□□□ 0.21
SNHG1-213ENST00000540725 WNT8BQ93098 351 aa16.35■□□□□ 0.21
SNHG1-213ENST00000540725 TSPYL2Q9H2G4 693 aaPredicted RBP16.35■□□□□ 0.21
SNHG1-213ENST00000540725 TNFRSF10AO00220 468 aa16.34■□□□□ 0.21
SNHG1-213ENST00000540725 GTPBP6O43824 516 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-213ENST00000540725 POU3F3P20264 500 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-213ENST00000540725 ARNTL2Q8WYA1 636 aa16.34■□□□□ 0.21
SNHG1-213ENST00000540725 MLXIPQ9HAP2 919 aa16.34■□□□□ 0.21
SNHG1-213ENST00000540725 RBM8AQ9Y5S9 174 aaKnown RBP16.34■□□□□ 0.21
SNHG1-213ENST00000540725 MTCH2Q9Y6C9 303 aa16.34■□□□□ 0.21
SNHG1-213ENST00000540725 FRMPD4Q14CM0 1322 aa16.34■□□□□ 0.21
SNHG1-213ENST00000540725 SIP14410 1827 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 DEFB103AP81534 67 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 HIC1Q14526 733 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 TCTN1Q2MV58 587 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 GNPTABQ3T906 1256 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 ZNF618Q5T7W0 954 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 TRAF7Q6Q0C0 670 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 TMCO2Q7Z6W1 182 aaPredicted RBP16.33■□□□□ 0.2
SNHG1-213ENST00000540725 ZNF654Q8IZM8 581 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 ADAMTS19Q8TE59 1207 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 C16orf70Q9BSU1 422 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 ZBED2Q9BTP6 218 aa16.33■□□□□ 0.2
SNHG1-213ENST00000540725 XIRP2A4UGR9 3374 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 ABHD14A-ACY1A0A1B0GW23 586 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 LCHNA4D1U4 455 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 DDAH1O94760 285 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 MRPS9P82933 396 aaKnown RBP16.32■□□□□ 0.2
SNHG1-213ENST00000540725 MBTPS1Q14703 1052 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 SKIV2LQ15477 1246 aaKnown RBP16.32■□□□□ 0.2
SNHG1-213ENST00000540725 SPRED2Q7Z698 418 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 SERINC5Q86VE9 423 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 IL27Q8NEV9 243 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 CTCFLQ8NI51 663 aaPredicted RBP16.32■□□□□ 0.2
SNHG1-213ENST00000540725 INPP4AQ96PE3 977 aaPredicted RBP16.32■□□□□ 0.2
SNHG1-213ENST00000540725 MAP3K14Q99558 947 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 MYL10Q9BUA6 226 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 SPZ1Q9BXG8 430 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 BCAS3Q9H6U6 928 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 LY9Q9HBG7 655 aa16.32■□□□□ 0.2
SNHG1-213ENST00000540725 H3BRB1 525 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 RBAK-RBAKDNI3L0D1 243 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 EFCAB14O75071 495 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 STAM2O75886 525 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 LGALS2P05162 132 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 ICAM3P32942 547 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 KIF5BP33176 963 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 SEMA3FQ13275 785 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 KRT40Q6A162 431 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms