RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 VSIG10LQ86VR7 867 aa8.22□□□□□ -1.09
VPS50-212ENST00000476413 SPATS2Q86XZ4 545 aaKnown RBP8.22□□□□□ -1.09
VPS50-212ENST00000476413 SH3RF2Q8TEC5 729 aa8.22□□□□□ -1.09
VPS50-212ENST00000476413 TRMT2BQ96GJ1 504 aaKnown RBP8.22□□□□□ -1.09
VPS50-212ENST00000476413 ASPSCR1Q9BZE9 553 aa8.22□□□□□ -1.09
VPS50-212ENST00000476413 CABP5Q9NP86 173 aa8.22□□□□□ -1.09
VPS50-212ENST00000476413 CATSPERZQ9NTU4 200 aa8.22□□□□□ -1.09
VPS50-212ENST00000476413 SLC5A4Q9NY91 659 aa8.22□□□□□ -1.09
VPS50-212ENST00000476413 ACSL6Q9UKU0 697 aa8.22□□□□□ -1.09
VPS50-212ENST00000476413 PTPDC1A2A3K4 754 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 GSTA4O15217 222 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 NRDCO43847 1150 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 MARCH6O60337 910 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 FKBP9O95302 570 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 ZBTB48P10074 688 aaPredicted RBP8.21□□□□□ -1.1
VPS50-212ENST00000476413 TMPRSS15P98073 1019 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 ODR4Q5SWX8 454 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 FKBP9P1Q75LS8 142 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 OTOP3Q7RTS5 596 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 OSTM1Q86WC4 334 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 RIOX2Q8IUF8 465 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 PDZD8Q8NEN9 1154 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 CHTF18Q8WVB6 975 aa8.21□□□□□ -1.1
VPS50-212ENST00000476413 SYTL4Q96C24 671 aaPredicted RBP8.21□□□□□ -1.1
VPS50-212ENST00000476413 APOBEC2Q9Y235 224 aaKnown RBP8.21□□□□□ -1.1
VPS50-212ENST00000476413 NKRFO15226 690 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS50-212ENST00000476413 GAS7O60861 476 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 ADAMTS4O75173 837 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 COL6A2P12110 1019 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 LSSP48449 732 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 HK2P52789 917 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 GPR19Q15760 415 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 CRY1Q16526 586 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 TIGD5Q53EQ6 642 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 RAVER1Q8IY67 606 aaKnown RBP8.2□□□□□ -1.1
VPS50-212ENST00000476413 COG1Q8WTW3 980 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS50-212ENST00000476413 GPR101Q96P66 508 aaPredicted RBP8.2□□□□□ -1.1
VPS50-212ENST00000476413 EPB41L1Q9H4G0 881 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 EMC7Q9NPA0 242 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 SPTLC3Q9NUV7 552 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 THG1LQ9NWX6 298 aaKnown RBP8.2□□□□□ -1.1
VPS50-212ENST00000476413 H2AFY2Q9P0M6 372 aaPredicted RBP8.2□□□□□ -1.1
VPS50-212ENST00000476413 ADAMTS6Q9UKP5 1117 aa8.2□□□□□ -1.1
VPS50-212ENST00000476413 G3BP2Q9UN86 482 aaKnown RBP8.2□□□□□ -1.1
VPS50-212ENST00000476413 SSTR4P31391 388 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 ERVFC1P60507 584 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 IL2P60568 153 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 NR0B2Q15466 257 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 SLC23A3Q6PIS1 610 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 HHIPL2Q6UWX4 724 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 NOSTRINQ8IVI9 506 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 LZTR1Q8N653 840 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 C2orf69Q8N8R5 385 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 FLCNQ8NFG4 579 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 PIP4K2CQ8TBX8 421 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 ZKSCAN5Q9Y2L8 839 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 TAF6LQ9Y6J9 622 aa8.19□□□□□ -1.1
VPS50-212ENST00000476413 MAN2B1O00754 1011 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 DVL2O14641 736 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 PSPNO60542 156 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 HPXP02790 462 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 GNAT1P11488 350 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 TACR1P25103 407 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 CHRNEQ04844 493 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 ARHGAP44Q17R89 818 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 MROH9Q5TGP6 573 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 GALNT18Q6P9A2 607 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 ARHGAP36Q6ZRI8 547 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 PANK1Q8TE04 598 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 SHISA4Q96DD7 197 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 CCDC8Q9H0W5 538 aaPredicted RBP8.18□□□□□ -1.1
VPS50-212ENST00000476413 PDLIM7Q9NR12 457 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 OXSMQ9NWU1 459 aa8.18□□□□□ -1.1
VPS50-212ENST00000476413 FITM1A5D6W6 292 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 KCNK3O14649 394 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 TGM5O43548 720 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 PRKCAP17252 672 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 SPIRE1Q08AE8 756 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 NLRX1Q86UT6 975 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 PTRH1Q86Y79 214 aaKnown RBP8.17□□□□□ -1.1
VPS50-212ENST00000476413 NUP43Q8NFH3 380 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 JDP2Q8WYK2 163 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 CEP89Q96ST8 783 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 BOCQ9BWV1 1114 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 PUS7LQ9H0K6 701 aaKnown RBP8.17□□□□□ -1.1
VPS50-212ENST00000476413 SLC6A20Q9NP91 592 aa8.17□□□□□ -1.1
VPS50-212ENST00000476413 MBNL3Q9NUK0 354 aaKnown RBP8.17□□□□□ -1.1
VPS50-212ENST00000476413 COA3Q9Y2R0 106 aaPredicted RBP8.17□□□□□ -1.1
VPS50-212ENST00000476413 ALDH1L1O75891 902 aa8.16□□□□□ -1.1
VPS50-212ENST00000476413 DGKIO75912 1065 aa8.16□□□□□ -1.1
VPS50-212ENST00000476413 PRKD3O94806 890 aa8.16□□□□□ -1.1
VPS50-212ENST00000476413 NTRK1P04629 796 aa8.16□□□□□ -1.1
VPS50-212ENST00000476413 GLI4P10075 376 aa8.16□□□□□ -1.1
VPS50-212ENST00000476413 KRT15P19012 456 aa8.16□□□□□ -1.1
VPS50-212ENST00000476413 RBM10P98175 930 aaKnown RBP8.16□□□□□ -1.1
VPS50-212ENST00000476413 SART3Q15020 963 aaKnown RBP8.16□□□□□ -1.1
VPS50-212ENST00000476413 SLC14A2Q15849 920 aa8.16□□□□□ -1.1
VPS50-212ENST00000476413 ATP13A4Q4VNC1 1196 aa8.16□□□□□ -1.1
VPS50-212ENST00000476413 EMC4Q5J8M3 183 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms