RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 EIF4A1P60842 406 aaKnown RBP14.38□□□□□ -0.11
USP40-208ENST00000450966 DMPKQ09013 629 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 EAPPQ56P03 285 aaPredicted RBP14.38□□□□□ -0.11
USP40-208ENST00000450966 RSBN1LQ6PCB5 846 aaPredicted RBP14.38□□□□□ -0.11
USP40-208ENST00000450966 LRRC31Q6UY01 552 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 MIGA1Q8NAN2 632 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 TRIM11Q96F44 468 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 VCPKMTQ9H867 229 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 SEPT3Q9UH03 358 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 PASKQ96RG2 1323 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 SUPT3HO75486 399 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 EEF1B2P24534 225 aaKnown RBP14.38□□□□□ -0.11
USP40-208ENST00000450966 CDR2Q01850 454 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 AP1B1Q10567 949 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 APPBP2Q92624 585 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 GRAMD1AQ96CP6 724 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 MDH1P40925 334 aaKnown RBP14.37□□□□□ -0.11
USP40-208ENST00000450966 IRAK1P51617 712 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 CEP85Q6P2H3 762 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 DTHD1Q6ZMT9 781 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 FLCNQ8NFG4 579 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 PHACTR3Q96KR7 559 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 METP08581 1390 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 ADRA2BP18089 450 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 RPL13P26373 211 aaKnown RBP14.37□□□□□ -0.11
USP40-208ENST00000450966 ECE1P42892 770 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 PLCD1P51178 756 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 CTSWP56202 376 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 FAM43BQ6ZT52 329 aaPredicted RBP14.37□□□□□ -0.11
USP40-208ENST00000450966 TTLL7Q6ZT98 887 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 RTKN2Q8IZC4 609 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 CATSPER1Q8NEC5 780 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 TTC16Q8NEE8 873 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 DDHD1Q8NEL9 900 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 CHURC1Q8WUH1 139 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 MAP3K15Q6ZN16 1313 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 A1BGP04217 495 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 PLA2G4AP47712 749 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 ROR2Q01974 943 aaKnown RBP14.37□□□□□ -0.11
USP40-208ENST00000450966 DAB2IPQ5VWQ8 1189 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 SPATA1Q5VX52 437 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 TRMT44Q8IYL2 757 aaKnown RBP14.37□□□□□ -0.11
USP40-208ENST00000450966 ZNF496Q96IT1 587 aaPredicted RBP14.37□□□□□ -0.11
USP40-208ENST00000450966 SH3GL1Q99961 368 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 PITPNM3Q9BZ71 974 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 USP6P35125 1406 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 KRT7P08729 469 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 NELFBQ8WX92 580 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 PA2G4Q9UQ80 394 aaKnown RBP14.37□□□□□ -0.11
USP40-208ENST00000450966 KIF1BO60333 1816 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 TET3O43151 1660 aa14.37□□□□□ -0.11
USP40-208ENST00000450966 TNNI3KQ59H18 835 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 NCAPH2Q6IBW4 605 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 TMED8Q6PL24 325 aaPredicted RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 HACE1Q8IYU2 909 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 ARPP21Q9UBL0 812 aaPredicted RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 FPGT-TNNI3KV9GXZ4 949 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 A0A1W2PQ27 194 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 A0A1W2PQ64 194 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 A0A1W2PQD8 194 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 KRT3P12035 628 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 MKRN3Q13064 507 aaKnown RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 SUPT20HL1Q3ZLR7 823 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 ZBTB38Q8NAP3 1195 aaPredicted RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 IFT122Q9HBG6 1241 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 ADGRL3Q9HAR2 1447 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 TSPAN9O75954 239 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 SLC27A3Q5K4L6 730 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 C11orf57Q6ZUT1 292 aaPredicted RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 DPH6Q7L8W6 267 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 CDAN1Q8IWY9 1227 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 HNRNPLLQ8WVV9 542 aaKnown RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 PPWD1Q96BP3 646 aaKnown RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 TRAIPQ9BWF2 469 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 ATP8A1Q9Y2Q0 1164 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 SPATA31A3Q5VYP0 1347 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 KCNJ18B7U540 433 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 MBD4O95243 580 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 KRT14P02533 472 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 USP14P54578 494 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 KCNJ12Q14500 433 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 PDXDC1Q6P996 788 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 BZW1Q7L1Q6 419 aaKnown RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 TRIM63Q969Q1 353 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 PAWRQ96IZ0 340 aaKnown RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 LRRC37BQ96QE4 947 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 TRIM56Q9BRZ2 755 aaKnown RBP14.36□□□□□ -0.11
USP40-208ENST00000450966 OVOS2A0A0G2JMS6 1433 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 OVOS2A0A0J9YW53 1432 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 OVOS2Q6IE36 1432 aa14.36□□□□□ -0.11
USP40-208ENST00000450966 M0QZ92 97 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 CMA1P23946 247 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 PNOCQ13519 176 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 DDX17Q92841 729 aaKnown RBP14.35□□□□□ -0.11
USP40-208ENST00000450966 POLE3Q9NRF9 147 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 SERPINB10P48595 397 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 NT5C2P49902 561 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 CCT6BQ92526 530 aa14.35□□□□□ -0.11
USP40-208ENST00000450966 SCHIP1Q9P0W5 487 aaPredicted RBP14.35□□□□□ -0.11
USP40-208ENST00000450966 ANP32DO95626 131 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms