RNA–Protein interactions for RNA: ENST00000364588.1

RNU4-4P-201, Transcript of RNA, U4 small nuclear 4, pseudogene, humanhuman

BASIC

Gene RNU4-4P, Length 130 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-4P-201ENST00000364588 SLC6A18Q96N87 628 aa6.97□□□□□ -1.29
RNU4-4P-201ENST00000364588 MKRN2Q9H000 416 aaKnown RBP6.97□□□□□ -1.29
RNU4-4P-201ENST00000364588 ANTXR1Q9H6X2 564 aa6.97□□□□□ -1.29
RNU4-4P-201ENST00000364588 NMRK2Q9NPI5 230 aa6.97□□□□□ -1.29
RNU4-4P-201ENST00000364588 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.97□□□□□ -1.29
RNU4-4P-201ENST00000364588 GJA8P48165 433 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 CNGB1Q14028 1251 aaPredicted RBP6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 C9orf131Q5VYM1 1079 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 INTS3Q68E01 1043 aaKnown RBP6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 RBBP8NLQ8NC74 664 aaPredicted RBP6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 DHX38Q92620 1227 aaKnown RBP6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 KIRREL1Q96J84 757 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 HDAC8Q9BY41 377 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 TGIF2Q9GZN2 237 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 CCSER2Q9H7U1 834 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 SLC52A2Q9HAB3 445 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 PCDHA11Q9Y5I1 949 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 AFDNP55196 1824 aaKnown RBP6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 SBF1O95248 1867 aa6.96□□□□□ -1.3
RNU4-4P-201ENST00000364588 SHISA3A0PJX4 238 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 POLRMTO00411 1230 aaKnown RBP6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 RNMTO43148 476 aaKnown RBP6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 TOMM70O94826 608 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 SOX9P48436 509 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 DUSP4Q13115 394 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 NBPF9Q3BBW0 867 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 DALRD3Q5D0E6 543 aaKnown RBP6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 CC2D1BQ5T0F9 858 aaKnown RBP6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 TTC6Q86TZ1 520 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 ZNF655Q8N720 491 aaPredicted RBP6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 DAGLBQ8NCG7 672 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 SLC9A7Q96T83 725 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 C19orf73Q9NVV2 129 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 FAM53CQ9NYF3 392 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 PRR13Q9NZ81 148 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 SUCOQ9UBS9 1254 aaKnown RBP6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 PPT2Q9UMR5 302 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 PCDHB12Q9Y5F1 795 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 KCPQ6ZWJ8 1503 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 SOS1Q07889 1333 aaPredicted RBP6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 KIF7Q2M1P5 1343 aa6.95□□□□□ -1.3
RNU4-4P-201ENST00000364588 MRC1P22897 1456 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 DNAJC25-GNG10A0A024R161 153 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 SIGLEC6O43699 453 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 CYP19A1P11511 503 aaPredicted RBP6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 GUCY2CP25092 1073 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 TM4SF1P30408 202 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 NFIXQ14938 502 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 MTHFSDQ2M296 383 aaKnown RBP6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 RNF111Q6ZNA4 994 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 LSRQ86X29 649 aaPredicted RBP6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 OR6P1Q8NGX9 317 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 CRBNQ96SW2 442 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 RNF181Q9P0P0 153 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 EFR3BQ9Y2G0 817 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 ZBTB1Q9Y2K1 713 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 COL15A1P39059 1388 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 CCDC88AQ3V6T2 1871 aa6.94□□□□□ -1.3
RNU4-4P-201ENST00000364588 WDR90Q96KV7 1748 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 UBR2Q8IWV8 1755 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 WASH4PA8MWX3 477 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 DIAPH1O60610 1272 aaKnown RBP6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 GLI1P08151 1106 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 ENDOUP21128 410 aaKnown RBP6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 CANXP27824 592 aaKnown RBP6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 PCBP3P57721 371 aaKnown RBP6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 HTRA3P83110 453 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 BBS9Q3SYG4 887 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 RALGPS1Q5JS13 557 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 OGFOD2Q6N063 350 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 TMEM192Q8IY95 271 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 C16orf71Q8IYS4 520 aaPredicted RBP6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 OXR1Q8N573 874 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 POU5F2Q8N7G0 328 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 PDZD8Q8NEN9 1154 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 ZNF512BQ96KM6 892 aaPredicted RBP6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 GINM1Q9NU53 330 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 NARFQ9UHQ1 456 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 STRIP2Q9ULQ0 834 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 SLC12A7Q9Y666 1083 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 NRXN2Q9P2S2 1712 aa6.93□□□□□ -1.3
RNU4-4P-201ENST00000364588 DLEC1Q9Y238 1755 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 FITM1A5D6W6 292 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 U2SURPO15042 1029 aaKnown RBP6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 HPXP02790 462 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 SERPINB2P05120 415 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 ACRP10323 421 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 HK2P52789 917 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 PMS1P54277 932 aaKnown RBP6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 TEKQ02763 1124 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 CHRNEQ04844 493 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 TMC3Q7Z5M5 1100 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 TNRC6CQ9HCJ0 1690 aaKnown RBP6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 KDM2BQ8NHM5 1336 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 CARMIL3Q8ND23 1372 aa6.92□□□□□ -1.3
RNU4-4P-201ENST00000364588 SIPA1L3O60292 1781 aaPredicted RBP6.91□□□□□ -1.3
RNU4-4P-201ENST00000364588 SSU72P8A0A1W2PR75 194 aa6.91□□□□□ -1.3
RNU4-4P-201ENST00000364588 PRAMEF1O95521 474 aa6.91□□□□□ -1.3
RNU4-4P-201ENST00000364588 ZGLP1P0C6A0 271 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms