RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 MPP3Q13368 585 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 LAMB3Q13751 1172 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 TRAPPC3LQ5T215 181 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 DGKHQ86XP1 1220 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 STAG2Q8N3U4 1231 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 SNX29Q8TEQ0 813 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 MAGEF1Q9HAY2 307 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 GPCPD1Q9NPB8 672 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 FAM207AQ9NSI2 230 aaPredicted RBP11.46□□□□□ -0.57
LIG1-220ENST00000601091 GRIN1Q05586 938 aa11.46□□□□□ -0.58
LIG1-220ENST00000601091 CUL4BQ13620 913 aa11.46□□□□□ -0.58
LIG1-220ENST00000601091 C2CD5Q86YS7 1000 aa11.46□□□□□ -0.58
LIG1-220ENST00000601091 TC2NQ8N9U0 490 aa11.46□□□□□ -0.58
LIG1-220ENST00000601091 DYDC1Q8WWB3 177 aa11.46□□□□□ -0.58
LIG1-220ENST00000601091 IFIH1Q9BYX4 1025 aaKnown RBP11.46□□□□□ -0.58
LIG1-220ENST00000601091 MINPP1Q9UNW1 487 aa11.46□□□□□ -0.58
LIG1-220ENST00000601091 A0A1B0GTH6 734 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 UBE2Q2LH0YL09 131 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 TIMM44O43615 452 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 SKAP2O75563 359 aaPredicted RBP11.45□□□□□ -0.58
LIG1-220ENST00000601091 IMPDH2P12268 514 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 NR1I3Q14994 352 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 PFKFB3Q16875 520 aaPredicted RBP11.45□□□□□ -0.58
LIG1-220ENST00000601091 NANOGNBQ7Z5D8 188 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 B4GALNT2Q8NHY0 566 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 DHRS1Q96LJ7 313 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 AK8Q96MA6 479 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 TRIM7Q9C029 511 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 SEL1LQ9UBV2 794 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 CCNL1Q9UK58 526 aaPredicted RBP11.45□□□□□ -0.58
LIG1-220ENST00000601091 NDUFA10O95299 355 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 USP17L8P0C7I0 530 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 SMARCA1P28370 1054 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 CLCN2P51788 898 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 ADCY7P51828 1080 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 HPS3Q969F9 1004 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 ZC3H12CQ9C0D7 883 aaKnown RBP11.45□□□□□ -0.58
LIG1-220ENST00000601091 MMADHCQ9H3L0 296 aaPredicted RBP11.45□□□□□ -0.58
LIG1-220ENST00000601091 PDE11AQ9HCR9 933 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 LMCD1Q9NZU5 365 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 GDAQ9Y2T3 454 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 XRN1Q8IZH2 1706 aaKnown RBP11.45□□□□□ -0.58
LIG1-220ENST00000601091 ANKRD33BA6NCL7 494 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 B4DLN1 442 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 ATP2C1P98194 919 aaPredicted RBP11.45□□□□□ -0.58
LIG1-220ENST00000601091 MTF1Q14872 753 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 LRRC23Q53EV4 343 aaPredicted RBP11.45□□□□□ -0.58
LIG1-220ENST00000601091 TYW1BQ6NUM6 668 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 TRIM58Q8NG06 486 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 AFAP1L1Q8TED9 768 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 FAXDC2Q96IV6 333 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 AGBL1Q96MI9 1066 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 PLEKHG4BQ96PX9 1271 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 PHF20Q9BVI0 1012 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 DISC1Q9NRI5 854 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 RGPD1P0DJD0 1748 aa11.45□□□□□ -0.58
LIG1-220ENST00000601091 CARNS1A5YM72 827 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 FAM205CA6NFA0 338 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 TBCAO75347 108 aaKnown RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 MAP3K9P80192 1104 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 C10orf62Q5T681 223 aaPredicted RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 RRAGAQ7L523 313 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 FAM76AQ8TAV0 307 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 ZNF483Q8TF39 744 aaPredicted RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 RSRC1Q96IZ7 334 aaKnown RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 DCP1AQ9NPI6 582 aaPredicted RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 GGA1Q9UJY5 639 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 FER1L4A9Z1Z3 1794 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 TRIM64CA6NLI5 447 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 ENC1O14682 589 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 ACTN4O43707 911 aaKnown RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 ZNF24P17028 368 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 EIF6P56537 245 aaKnown RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 MAP7D1Q3KQU3 841 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 SLC9C1Q4G0N8 1177 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 SDCCAG8Q86SQ7 713 aaPredicted RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 MYO1HQ8N1T3 1032 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 DRAXINQ8NBI3 349 aaPredicted RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 P2RX5Q93086 422 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 NAP1L4Q99733 375 aaKnown RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 ABHD10Q9NUJ1 306 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 NT5C2P49902 561 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 TOB1P50616 345 aaPredicted RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 FAM98CQ17RN3 349 aaKnown RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 MAMSTRQ6ZN01 415 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 MAATS1Q7Z4T9 603 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 SUGP1Q8IWZ8 645 aaKnown RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 REXO1L1PQ8IX06 675 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 C8orf37Q96NL8 207 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 NOX5Q96PH1 765 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 SELENOOQ9BVL4 669 aa11.44□□□□□ -0.58
LIG1-220ENST00000601091 SETD1AO15047 1707 aaKnown RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 ZNF335Q9H4Z2 1342 aaPredicted RBP11.44□□□□□ -0.58
LIG1-220ENST00000601091 EME2A4GXA9 379 aaPredicted RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 NMT2O60551 498 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 SASH3O75995 380 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 FOXP4Q8IVH2 680 aaPredicted RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 SLC43A3Q8NBI5 491 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 MIPOL1Q8TD10 442 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 ATRIPQ8WXE1 791 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms