RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 TMEM199Q8N511 208 aa12.15□□□□□ -0.46
CCDC9-203ENST00000596938 AFG1LQ8WV93 481 aa12.15□□□□□ -0.46
CCDC9-203ENST00000596938 PIBF1Q8WXW3 757 aa12.15□□□□□ -0.46
CCDC9-203ENST00000596938 TRPV6Q9H1D0 765 aa12.15□□□□□ -0.46
CCDC9-203ENST00000596938 ALDH8A1Q9H2A2 487 aaPredicted RBP12.15□□□□□ -0.46
CCDC9-203ENST00000596938 MEIS2O14770 477 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 EPB41L2O43491 1005 aaKnown RBP12.14□□□□□ -0.47
CCDC9-203ENST00000596938 B4GALT4O60513 344 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 STAM2O75886 525 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 REC8O95072 547 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 MYCLP12524 364 aaPredicted RBP12.14□□□□□ -0.47
CCDC9-203ENST00000596938 RXRAP19793 462 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 CASTP20810 708 aaKnown RBP12.14□□□□□ -0.47
CCDC9-203ENST00000596938 HSPA4P34932 840 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 PTPN11Q06124 597 aaPredicted RBP12.14□□□□□ -0.47
CCDC9-203ENST00000596938 PPIGQ13427 754 aaKnown RBP eCLIP12.14□□□□□ -0.471e-14■■□□□ 13.2
CCDC9-203ENST00000596938 NBPF20Q3BBV1 942 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 XRRA1Q6P2D8 792 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 APOA5Q6Q788 366 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 TMTC3Q6ZXV5 915 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 FCHSD1Q86WN1 690 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 DHX37Q8IY37 1157 aaKnown RBP12.14□□□□□ -0.47
CCDC9-203ENST00000596938 CMTR1Q8N1G2 835 aaKnown RBP12.14□□□□□ -0.47
CCDC9-203ENST00000596938 HIPK3Q9H422 1215 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 RBM28Q9NW13 759 aaKnown RBP12.14□□□□□ -0.47
CCDC9-203ENST00000596938 BRPF3Q9ULD4 1205 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 MRVI1Q9Y6F6 885 aa12.14□□□□□ -0.47
CCDC9-203ENST00000596938 FRMPD4Q14CM0 1322 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 MCM3APO60318 1980 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 ZBTB43O43298 467 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 PPFIA4O75335 1185 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 MMP3P08254 477 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 RCAN1P53805 252 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 SMAD3P84022 425 aaKnown RBP12.13□□□□□ -0.47
CCDC9-203ENST00000596938 DGKDQ16760 1214 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 MYSM1Q5VVJ2 828 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 C16orf59Q7L2K0 433 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 MICU3Q86XE3 530 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 TEX2Q8IWB9 1127 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 FBXL16Q8N461 479 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 CCDC82Q8N4S0 544 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 DEFB123Q8N688 67 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 IL31RAQ8NI17 732 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 PPTC7Q8NI37 304 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 CUL5Q93034 780 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 NOC4LQ9BVI4 516 aaKnown RBP12.13□□□□□ -0.47
CCDC9-203ENST00000596938 PSTPIP2Q9H939 334 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 PPP4R2Q9NY27 417 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 SNX14Q9Y5W7 946 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 LCTP09848 1927 aa12.13□□□□□ -0.47
CCDC9-203ENST00000596938 SPATA31C2B4DYI2 1134 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 HOXD8P13378 290 aaPredicted RBP12.12□□□□□ -0.47
CCDC9-203ENST00000596938 CSF2RAP15509 400 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 ICAM3P32942 547 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 CYP2C18P33260 490 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 MRPS9P82933 396 aaKnown RBP12.12□□□□□ -0.47
CCDC9-203ENST00000596938 SP2Q02086 613 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 FUT2Q10981 343 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 GNPTABQ3T906 1256 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 CELF3Q5SZQ8 465 aaKnown RBP12.12□□□□□ -0.47
CCDC9-203ENST00000596938 USP17L6PQ6QN14 398 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 SESTD1Q86VW0 696 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 RAB11FIP4Q86YS3 637 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 SMARCC2Q8TAQ2 1214 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 TCEANC2Q96MN5 208 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 INPP4AQ96PE3 977 aaPredicted RBP12.12□□□□□ -0.47
CCDC9-203ENST00000596938 PPP1R12CQ9BZL4 782 aa12.12□□□□□ -0.47
CCDC9-203ENST00000596938 LRRC37A2A6NM11 1700 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 PSMA5P28066 241 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 RTN1Q16799 776 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 FAM47CQ5HY64 1035 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 TMEM240Q5SV17 173 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 RASIP1Q5U651 963 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 PCNX4Q63HM2 1172 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 KAT2BQ92831 832 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 RNPC3Q96LT9 517 aaKnown RBP12.11□□□□□ -0.47
CCDC9-203ENST00000596938 JAKMIP1Q96N16 626 aaKnown RBP12.11□□□□□ -0.47
CCDC9-203ENST00000596938 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC9-203ENST00000596938 IL23AQ9NPF7 189 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 FAM217BQ9NTX9 383 aaPredicted RBP12.11□□□□□ -0.47
CCDC9-203ENST00000596938 TRMT13Q9NUP7 481 aaKnown RBP12.11□□□□□ -0.47
CCDC9-203ENST00000596938 MTMR10Q9NXD2 777 aa12.11□□□□□ -0.47
CCDC9-203ENST00000596938 V9GY48 417 aaPredicted RBP12.11□□□□□ -0.47
CCDC9-203ENST00000596938 KLF18A0A0U1RQI7 1052 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.1□□□□□ -0.47
CCDC9-203ENST00000596938 CCDC196A0A1B0GTZ2 297 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.1□□□□□ -0.47
CCDC9-203ENST00000596938 hCG_1642624A0A1W2PR95 340 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 HAS3O00219 553 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 GGPS1O95749 300 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 CYP2C9P11712 490 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 FGD1P98174 961 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 NEDD9Q14511 834 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 HSDL1Q3SXM5 330 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 PSRC1Q6PGN9 363 aaPredicted RBP12.1□□□□□ -0.47
CCDC9-203ENST00000596938 BLOC1S2Q6QNY1 142 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 ZNF365Q70YC5 407 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 Q7L0L9 218 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 HEATR3Q7Z4Q2 680 aa12.1□□□□□ -0.47
CCDC9-203ENST00000596938 RPUSD2Q8IZ73 545 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms