RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PCDHGA3Q9Y5H0 932 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 SETD1AO15047 1707 aaKnown RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 A0A1W2PQ67 120 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 GOLGA8AA7E2F4 631 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 EBAG9O00559 213 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 AP1B1Q10567 949 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 SAFBQ15424 915 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 METTL24Q5JXM2 366 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 WDR45BQ5MNZ6 344 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 C16orf54Q6UWD8 224 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 LRRC45Q96CN5 670 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 EHMT1Q9H9B1 1298 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 PIH1D1Q9NWS0 290 aaKnown RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 E2F3O00716 465 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 RHOBTB3O94955 611 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 TXLNAP40222 546 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 OXCT1P55809 520 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 MFSD6Q6ZSS7 791 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 IFNL1Q8IU54 200 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 TRIM58Q8NG06 486 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 ARHGAP45Q92619 1136 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 INTS4Q96HW7 963 aaKnown RBP9.73□□□□□ -0.85
VPS13D-212ENST00000543766 CEP44Q9C0F1 390 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 ZNF510Q9Y2H8 683 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 ABCC11Q96J66 1382 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 TMCC1O94876 653 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 NPPAP01160 153 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 STAT3P40763 770 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 P3H1Q32P28 736 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 IL31Q6EBC2 164 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 ARHGEF18Q6ZSZ5 1173 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 RUFY3Q7L099 469 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 DDI1Q8WTU0 396 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 C8orf37Q96NL8 207 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 TSG101Q99816 390 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 NRDE2Q9H7Z3 1164 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 PLEKHA5Q9HAU0 1116 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 CYP27B1O15528 508 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 BTG3Q14201 252 aaPredicted RBP9.73□□□□□ -0.85
VPS13D-212ENST00000543766 TAF7Q15545 349 aaPredicted RBP9.73□□□□□ -0.85
VPS13D-212ENST00000543766 PPP1R18Q6NYC8 613 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 POTEDQ86YR6 584 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 SLC15A3Q8IY34 581 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 TMEM57Q8N5G2 664 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 SVIPQ8NHG7 77 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 BRSK1Q8TDC3 778 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 E2F7Q96AV8 911 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 CSRNP2Q9H175 543 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 FBXO2Q9UK22 296 aaPredicted RBP9.73□□□□□ -0.85
VPS13D-212ENST00000543766 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.73□□□□□ -0.85
VPS13D-212ENST00000543766 NCKAP5LQ9HCH0 1330 aa9.73□□□□□ -0.85
VPS13D-212ENST00000543766 IFRD1O00458 451 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 ATP9BO43861 1147 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 PTGS1P23219 599 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 KRT83P78385 493 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 WDR44Q5JSH3 913 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 NLRP14Q86W24 1093 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 FAM20CQ8IXL6 584 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 KCT2Q8NC54 265 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 FSD1Q9BTV5 496 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 L2HGDHQ9H9P8 463 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 C12orf4Q9NQ89 552 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 VPS45Q9NRW7 570 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 FKBP14Q9NWM8 211 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 MYO1FO00160 1098 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 CPP00450 1065 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 C15orf59Q2T9L4 293 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 RCSD1Q6JBY9 416 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 PLA2G4DQ86XP0 818 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 REXO1L1PQ8IX06 675 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 EIF2AQ9BY44 585 aaKnown RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 OXCT2Q9BYC2 517 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 GDPD2Q9HCC8 539 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 CASS4Q9NQ75 786 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 FAM50BQ9Y247 325 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 ZBTB1Q9Y2K1 713 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 MYO5BQ9ULV0 1848 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 PTCH1Q13635 1447 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 PHACTR2O75167 634 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 ATF7P17544 494 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 GCLCP48506 637 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 NEK3P51956 506 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 CDK17Q00537 523 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 INO80DQ53TQ3 878 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 NUGGCQ68CJ6 796 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 ADALQ6DHV7 355 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 TCP11L2Q8N4U5 519 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 RAPGEF5Q92565 580 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 CASP10Q92851 521 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 CCDC127Q96BQ5 260 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 MRPL9Q9BYD2 267 aaKnown RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 PPP1R12CQ9BZL4 782 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 QTRT2Q9H974 415 aaKnown RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 PCDH18Q9HCL0 1135 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 POLMQ9NP87 494 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-212ENST00000543766 STARD7Q9NQZ5 370 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 C8orf4Q9NR00 106 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 RASAL2Q9UJF2 1139 aa9.72□□□□□ -0.85
VPS13D-212ENST00000543766 PPIDQ08752 370 aaKnown RBP9.71□□□□□ -0.85
VPS13D-212ENST00000543766 ZSCAN25Q6NSZ9 544 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms