RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SLC43A3Q8NBI5 491 aa17.41■□□□□ 0.38
USP39-217ENST00000491659 SMARCC2Q8TAQ2 1214 aa17.41■□□□□ 0.38
USP39-217ENST00000491659 KLF18A0A0U1RQI7 1052 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 A6NJR5 290 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 GOLGA8AA7E2F4 631 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 GOLGA8BA8MQT2 603 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 TIMP1P01033 207 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 ITGB8P26012 769 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 FPGSQ05932 587 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 LY6KQ17RY6 165 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 KCNV1Q6PIU1 500 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 BLOC1S2Q6QNY1 142 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 CCDC82Q8N4S0 544 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 KCNB2Q92953 911 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 LRCH3Q96II8 777 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 NAP1L2Q9ULW6 460 aaPredicted RBP17.4■□□□□ 0.38
USP39-217ENST00000491659 SNX14Q9Y5W7 946 aa17.4■□□□□ 0.38
USP39-217ENST00000491659 EPB41L2O43491 1005 aaKnown RBP17.39■□□□□ 0.37
USP39-217ENST00000491659 CD4P01730 458 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 MMP3P08254 477 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 RCAN1P53805 252 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 ARHGAP1Q07960 439 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 VSIG10LQ86VR7 867 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 IL31RAQ8NI17 732 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 PPP1R12CQ9BZL4 782 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 DDX41Q9UJV9 622 aaKnown RBP17.39■□□□□ 0.37
USP39-217ENST00000491659 BRPF3Q9ULD4 1205 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 GRIN2DO15399 1336 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 FRMPD4Q14CM0 1322 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 CNTNAP5Q8WYK1 1306 aa17.39■□□□□ 0.37
USP39-217ENST00000491659 hCG_1642624A0A1W2PR95 340 aa17.38■□□□□ 0.37
USP39-217ENST00000491659 PIK3CDO00329 1044 aa17.38■□□□□ 0.37
USP39-217ENST00000491659 PSMA5P28066 241 aa17.38■□□□□ 0.37
USP39-217ENST00000491659 FAM47CQ5HY64 1035 aa17.38■□□□□ 0.37
USP39-217ENST00000491659 MFSD5Q6N075 450 aa17.38■□□□□ 0.37
USP39-217ENST00000491659 HEATR3Q7Z4Q2 680 aa17.38■□□□□ 0.37
USP39-217ENST00000491659 AFG1LQ8WV93 481 aa17.38■□□□□ 0.37
USP39-217ENST00000491659 B4GALT4O60513 344 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 STAM2O75886 525 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 CPA1P15085 419 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 LAMC2Q13753 1193 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 SHHQ15465 462 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 GNPTABQ3T906 1256 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 USP17L6PQ6QN14 398 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 Q6ZUG5 572 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 DHX37Q8IY37 1157 aaKnown RBP17.37■□□□□ 0.37
USP39-217ENST00000491659 TMEM199Q8N511 208 aa17.37■□□□□ 0.37
USP39-217ENST00000491659 EMID1Q96A84 441 aaPredicted RBP17.37■□□□□ 0.37
USP39-217ENST00000491659 ALDH8A1Q9H2A2 487 aaPredicted RBP17.37■□□□□ 0.37
USP39-217ENST00000491659 TANC1Q9C0D5 1861 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 DOCK5Q9H7D0 1870 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 MEIS2O14770 477 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 SUPT20HL2P0C7V6 817 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 CASTP20810 708 aaKnown RBP17.36■□□□□ 0.37
USP39-217ENST00000491659 RPS6KB1P23443 525 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 METAP2P50579 478 aaKnown RBP eCLIP17.36■□□□□ 0.37
USP39-217ENST00000491659 PPIGQ13427 754 aaKnown RBP eCLIP17.36■□□□□ 0.376e-7■■■□□ 16
USP39-217ENST00000491659 DGKDQ16760 1214 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 NBPF20Q3BBV1 942 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 C9orf50Q5SZB4 431 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 GPR153Q6NV75 609 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 NFRKBQ6P4R8 1299 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 GPKOWQ92917 476 aaPredicted RBP eCLIP17.36■□□□□ 0.37
USP39-217ENST00000491659 BRF1Q92994 677 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 TRPV6Q9H1D0 765 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 HIPK3Q9H422 1215 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 PSTPIP2Q9H939 334 aa17.36■□□□□ 0.37
USP39-217ENST00000491659 CCDC196A0A1B0GTZ2 297 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 hCG_1984214I3L0E3 225 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 RGS20O76081 388 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 GGPS1O95749 300 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 TGFB3P10600 412 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 UBA1P22314 1058 aaKnown RBP17.35■□□□□ 0.37
USP39-217ENST00000491659 CHMP4BP1P59074 171 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 PTPN11Q06124 597 aaPredicted RBP17.35■□□□□ 0.37
USP39-217ENST00000491659 APOBRQ0VD83 1088 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 PPP1R18Q6NYC8 613 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 ZNF713Q8N859 430 aaPredicted RBP17.35■□□□□ 0.37
USP39-217ENST00000491659 PPTC7Q8NI37 304 aa17.35■□□□□ 0.37
USP39-217ENST00000491659 ZFP91Q96JP5 570 aaPredicted RBP17.35■□□□□ 0.37
USP39-217ENST00000491659 RNPC3Q96LT9 517 aaKnown RBP17.35■□□□□ 0.37
USP39-217ENST00000491659 SPDYE3A6NKU9 549 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 CYP2C18P33260 490 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 EPHB4P54760 987 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 NAPAP54920 295 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 MRPS9P82933 396 aaKnown RBP17.34■□□□□ 0.37
USP39-217ENST00000491659 CELF3Q5SZQ8 465 aaKnown RBP17.34■□□□□ 0.37
USP39-217ENST00000491659 PCNX4Q63HM2 1172 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 WWC2Q6AWC2 1192 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 XRRA1Q6P2D8 792 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 INPP4AQ96PE3 977 aaPredicted RBP17.34■□□□□ 0.37
USP39-217ENST00000491659 NOC4LQ9BVI4 516 aaKnown RBP17.34■□□□□ 0.37
USP39-217ENST00000491659 KATNAL1Q9BW62 490 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 EHMT1Q9H9B1 1298 aa17.34■□□□□ 0.37
USP39-217ENST00000491659 TRMT13Q9NUP7 481 aaKnown RBP17.34■□□□□ 0.37
USP39-217ENST00000491659 NID2Q14112 1375 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 FIBPO43427 364 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 SORBS3O60504 671 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 CSF2RAP15509 400 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 CDC27P30260 824 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms