RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 ZNF658Q5TYW1 1059 aaPredicted RBP12.12□□□□□ -0.47
HDAC6-228ENST00000486227 EFCAB13Q8IY85 973 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 HACE1Q8IYU2 909 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 FER1L4A9Z1Z3 1794 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 SPOPO43791 374 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 KRT26Q7Z3Y9 468 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 C2orf69Q8N8R5 385 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 KIFAP3Q92845 792 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 NSRP1Q9H0G5 558 aaKnown RBP12.12□□□□□ -0.47
HDAC6-228ENST00000486227 JRKLQ9Y4A0 524 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 ADGRB2O60241 1585 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 P2RX5Q93086 422 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 RSRC1Q96IZ7 334 aaKnown RBP12.11□□□□□ -0.47
HDAC6-228ENST00000486227 SENP2Q9HC62 589 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 MYOM1P52179 1685 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 CCDC144BQ3MJ40 725 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 ZNF354CQ86Y25 554 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 DHTKD1Q96HY7 919 aaPredicted RBP12.11□□□□□ -0.47
HDAC6-228ENST00000486227 PARD6BQ9BYG5 372 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 SH3GLB2Q9NR46 395 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 ODR4Q5SWX8 454 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 STAG2Q8N3U4 1231 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 NUCKS1Q9H1E3 243 aaKnown RBP12.11□□□□□ -0.47
HDAC6-228ENST00000486227 K7ENM7 598 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 SLC8A3P57103 927 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 FBXO33Q7Z6M2 555 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 CPLX4Q7Z7G2 160 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 ZNF577Q9BSK1 485 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 DISC1Q9NRI5 854 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 STK17AQ9UEE5 414 aa12.11□□□□□ -0.47
HDAC6-228ENST00000486227 POLR2FP61218 127 aaKnown RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 GRM4Q14833 912 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 TBC1D10BQ4KMP7 808 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 NEDD1Q8NHV4 660 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 CCDC97Q96F63 343 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 CTTNBP2NLQ9P2B4 639 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 TRPC6Q9Y210 931 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 EPN1Q9Y6I3 576 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 CHRNA5P30532 468 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 TRPC3Q13507 836 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 GSTA5Q7RTV2 222 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 SPATS2Q86XZ4 545 aaKnown RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 SRBD1Q8N5C6 995 aaKnown RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 IQCDQ96DY2 449 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 ANO3Q9BYT9 981 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 OSBPL5Q9H0X9 879 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 CNTNAP4Q9C0A0 1308 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 BCRP11274 1271 aa12.1□□□□□ -0.47
HDAC6-228ENST00000486227 SND1Q7KZF4 910 aaKnown RBP eCLIP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 ZNF277Q9NRM2 450 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-228ENST00000486227 A0A087WUV0 522 aaPredicted RBP12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L15C9J2P7 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L13C9JLJ4 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L11C9JVI0 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L18D6R9N7 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L22D6RA61 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L17D6RBQ6 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L19D6RCP7 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L20D6RJB6 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 AKR1B1P15121 316 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 STAT1P42224 750 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L24Q0WX57 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 C8orf74Q6P047 294 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L6PQ6QN14 398 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 CCDC155Q8N6L0 562 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 IWS1Q96ST2 819 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 FAM204AQ9H8W3 233 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 ADD3Q9UEY8 706 aaKnown RBP12.09□□□□□ -0.47
HDAC6-228ENST00000486227 FAN1Q9Y2M0 1017 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 USP17L10C9JJH3 530 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 CEP104O60308 925 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 ASNSP08243 561 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 TNNI1P19237 187 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 EEF1GP26641 437 aaKnown RBP12.09□□□□□ -0.47
HDAC6-228ENST00000486227 CYP2C19P33261 490 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 ICE2Q659A1 982 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 CRAMP1Q96RY5 1269 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 GDAQ9Y2T3 454 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 SAR1BQ9Y6B6 198 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 IQCA1LA6NCM1 817 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 ZBTB5O15062 677 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 NR2F2P24468 414 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 KLRK1P26718 216 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 LIG3P49916 1009 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 CASP7P55210 303 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 RBL2Q08999 1139 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 CUL4BQ13620 913 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 CCDC117Q8IWD4 279 aaPredicted RBP12.09□□□□□ -0.47
HDAC6-228ENST00000486227 ZNF579Q8NAF0 562 aaKnown RBP12.09□□□□□ -0.47
HDAC6-228ENST00000486227 LRRC45Q96CN5 670 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 ADAM21Q9UKJ8 722 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 NAA25Q14CX7 972 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 SHC4Q6S5L8 630 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 ANKRD13CQ8N6S4 541 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 DEPTORQ8TB45 409 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 CCDC127Q96BQ5 260 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 NBPF3Q9H094 633 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 MTUS1Q9ULD2 1270 aa12.09□□□□□ -0.47
HDAC6-228ENST00000486227 DAGLAQ9Y4D2 1042 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms