RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 NFRKBQ6P4R8 1299 aa22.43■■□□□ 1.18
USP40-207ENST00000450940 RASEFQ8IZ41 740 aa22.43■■□□□ 1.18
USP40-207ENST00000450940 AFG1LQ8WV93 481 aa22.43■■□□□ 1.18
USP40-207ENST00000450940 NOC4LQ9BVI4 516 aaKnown RBP22.43■■□□□ 1.18
USP40-207ENST00000450940 PPP1R12CQ9BZL4 782 aa22.43■■□□□ 1.18
USP40-207ENST00000450940 HIPK3Q9H422 1215 aa22.43■■□□□ 1.18
USP40-207ENST00000450940 SLC12A7Q9Y666 1083 aa22.43■■□□□ 1.18
USP40-207ENST00000450940 PLEKHA8P1O95397 391 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 SUPT20HL2P0C7V6 817 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 CSF2RAP15509 400 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 CYP2C18P33260 490 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 PTPN11Q06124 597 aaPredicted RBP22.42■■□□□ 1.18
USP40-207ENST00000450940 NBPF20Q3BBV1 942 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 KCNV1Q6PIU1 500 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 FANCBQ8NB91 859 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 IL31RAQ8NI17 732 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 KCNB2Q92953 911 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 RNPC3Q96LT9 517 aaKnown RBP22.42■■□□□ 1.18
USP40-207ENST00000450940 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.42■■□□□ 1.18
USP40-207ENST00000450940 LRRC2Q9BYS8 371 aa22.42■■□□□ 1.18
USP40-207ENST00000450940 MMP3P08254 477 aa22.41■■□□□ 1.18
USP40-207ENST00000450940 TGFB3P10600 412 aa22.41■■□□□ 1.18
USP40-207ENST00000450940 MYCLP12524 364 aaPredicted RBP22.41■■□□□ 1.18
USP40-207ENST00000450940 TMEM240Q5SV17 173 aa22.41■■□□□ 1.18
USP40-207ENST00000450940 RASIP1Q5U651 963 aa22.41■■□□□ 1.18
USP40-207ENST00000450940 DHX32Q7L7V1 743 aaKnown RBP22.41■■□□□ 1.18
USP40-207ENST00000450940 MRVI1Q9Y6F6 885 aa22.41■■□□□ 1.18
USP40-207ENST00000450940 UMODL1Q5DID0 1318 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 PIK3CDO00329 1044 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 RXRAP19793 462 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 CCND2P30279 289 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 LAMC2Q13753 1193 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 KRT32Q14532 448 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 ADCK5Q3MIX3 580 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 FCHSD1Q86WN1 690 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 PIBF1Q8WXW3 757 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 IL23AQ9NPF7 189 aa22.4■■□□□ 1.18
USP40-207ENST00000450940 TRMT13Q9NUP7 481 aaKnown RBP22.4■■□□□ 1.18
USP40-207ENST00000450940 SEC63Q9UGP8 760 aaKnown RBP22.4■■□□□ 1.18
USP40-207ENST00000450940 HOXD8P13378 290 aaPredicted RBP22.39■■□□□ 1.17
USP40-207ENST00000450940 CASTP20810 708 aaKnown RBP22.39■■□□□ 1.17
USP40-207ENST00000450940 APOA5Q6Q788 366 aa22.39■■□□□ 1.17
USP40-207ENST00000450940 TMTC3Q6ZXV5 915 aa22.39■■□□□ 1.17
USP40-207ENST00000450940 KAT2BQ92831 832 aa22.39■■□□□ 1.17
USP40-207ENST00000450940 WNT8AQ9H1J5 351 aa22.39■■□□□ 1.17
USP40-207ENST00000450940 COL6A3P12111 3177 aa22.39■■□□□ 1.17
USP40-207ENST00000450940 MEIS2O14770 477 aa22.38■■□□□ 1.17
USP40-207ENST00000450940 STAM2O75886 525 aa22.38■■□□□ 1.17
USP40-207ENST00000450940 DGKDQ16760 1214 aa22.38■■□□□ 1.17
USP40-207ENST00000450940 MYSM1Q5VVJ2 828 aa22.38■■□□□ 1.17
USP40-207ENST00000450940 PSRC1Q6PGN9 363 aaPredicted RBP22.38■■□□□ 1.17
USP40-207ENST00000450940 SESTD1Q86VW0 696 aa22.38■■□□□ 1.17
USP40-207ENST00000450940 DHX37Q8IY37 1157 aaKnown RBP22.38■■□□□ 1.17
USP40-207ENST00000450940 CMTR1Q8N1G2 835 aaKnown RBP22.38■■□□□ 1.17
USP40-207ENST00000450940 PPTC7Q8NI37 304 aa22.38■■□□□ 1.17
USP40-207ENST00000450940 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.37■■□□□ 1.17
USP40-207ENST00000450940 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.37■■□□□ 1.17
USP40-207ENST00000450940 HMGB1P09429 215 aaKnown RBP22.37■■□□□ 1.17
USP40-207ENST00000450940 MRPS9P82933 396 aaKnown RBP22.37■■□□□ 1.17
USP40-207ENST00000450940 CELF3Q5SZQ8 465 aaKnown RBP22.37■■□□□ 1.17
USP40-207ENST00000450940 SYNE3Q6ZMZ3 975 aa22.37■■□□□ 1.17
USP40-207ENST00000450940 ZNF365Q70YC5 407 aa22.37■■□□□ 1.17
USP40-207ENST00000450940 INPP4AQ96PE3 977 aaPredicted RBP22.37■■□□□ 1.17
USP40-207ENST00000450940 STXBP5LQ9Y2K9 1186 aa22.37■■□□□ 1.17
USP40-207ENST00000450940 PPFIA4O75335 1185 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 CYP2C9P11712 490 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 ICAM3P32942 547 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 SP2Q02086 613 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 XRRA1Q6P2D8 792 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 USP17L6PQ6QN14 398 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 MICU3Q86XE3 530 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 RAB11FIP4Q86YS3 637 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 HERVK_113Q902F9 699 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 CUL5Q93034 780 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 VWCEQ96DN2 955 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 BRPF3Q9ULD4 1205 aa22.36■■□□□ 1.17
USP40-207ENST00000450940 HAS3O00219 553 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 ACRP10323 421 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 HSPA4P34932 840 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 CCL23P55773 120 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 FUT2Q10981 343 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 FAM47CQ5HY64 1035 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 ZNF697Q5TEC3 545 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 SMARCC2Q8TAQ2 1214 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 TCEANC2Q96MN5 208 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 GUCD1Q96NT3 240 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 SEMA6BQ9H3T3 888 aa22.35■■□□□ 1.17
USP40-207ENST00000450940 RBM28Q9NW13 759 aaKnown RBP22.35■■□□□ 1.17
USP40-207ENST00000450940 TRIP12Q14669 1992 aaPredicted RBP22.34■■□□□ 1.17
USP40-207ENST00000450940 TMEM265A0A087WTH1 108 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 SPATA31C2B4DYI2 1134 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 PITPNM1O00562 1244 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 GGPS1O95749 300 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 F2P00734 622 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 FGBP02675 491 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 UBA1P22314 1058 aaKnown RBP22.34■■□□□ 1.17
USP40-207ENST00000450940 RCAN1P53805 252 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 HSDL1Q3SXM5 330 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 PCNX4Q63HM2 1172 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 RPUSD2Q8IZ73 545 aaKnown RBP22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms