RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 METTL14Q9HCE5 456 aaKnown RBP20.4■□□□□ 0.86
USP48-204ENST00000400301 RABGAP1Q9Y3P9 1069 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 ABCB4P21439 1286 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 MAP2K1Q02750 393 aaPredicted RBP20.4■□□□□ 0.86
USP48-204ENST00000400301 TCP10L2B9ZVM9 353 aa20.39■□□□□ 0.86
USP48-204ENST00000400301 NDUFAB1O14561 156 aa20.39■□□□□ 0.86
USP48-204ENST00000400301 ATP2C2O75185 946 aa20.39■□□□□ 0.86
USP48-204ENST00000400301 GYS2P54840 703 aa20.39■□□□□ 0.86
USP48-204ENST00000400301 EARS2Q5JPH6 523 aaKnown RBP20.39■□□□□ 0.86
USP48-204ENST00000400301 WDR78Q5VTH9 848 aa20.39■□□□□ 0.86
USP48-204ENST00000400301 FAM178BQ8IXR5 827 aa20.39■□□□□ 0.86
USP48-204ENST00000400301 DHX37Q8IY37 1157 aaKnown RBP20.39■□□□□ 0.86
USP48-204ENST00000400301 MICALL1Q8N3F8 863 aa20.39■□□□□ 0.86
USP48-204ENST00000400301 HOMER2Q9NSB8 354 aa20.39■□□□□ 0.86
USP48-204ENST00000400301 USP17L15C9J2P7 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L13C9JLJ4 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L11C9JVI0 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L18D6R9N7 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L22D6RA61 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L17D6RBQ6 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L19D6RCP7 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L20D6RJB6 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L24Q0WX57 530 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 USP17L6PQ6QN14 398 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 C3orf67Q6ZVT6 689 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 FNBP4Q8N3X1 1017 aaPredicted RBP20.39■□□□□ 0.85
USP48-204ENST00000400301 CTTNBP2NLQ9P2B4 639 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 PVALEFA0A1B0GWK0 134 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 A0A1W2PQC6 194 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 H2AFZP0C0S5 128 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 RASA1P20936 1047 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 ANKRD40Q6AI12 368 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 H2AFVQ71UI9 128 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 MYCLP12524 364 aaPredicted RBP20.39■□□□□ 0.85
USP48-204ENST00000400301 CDC37Q16543 378 aaPredicted RBP20.39■□□□□ 0.85
USP48-204ENST00000400301 RC3H1Q5TC82 1133 aaKnown RBP20.39■□□□□ 0.85
USP48-204ENST00000400301 RASGRP2Q7LDG7 609 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 ANO3Q9BYT9 981 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 FAM204AQ9H8W3 233 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 HDAC6Q9UBN7 1215 aa20.39■□□□□ 0.85
USP48-204ENST00000400301 FAM196BA6NMK8 535 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 AKR1B1P15121 316 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 DAAM2Q86T65 1068 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 ST7Q9NRC1 585 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 FAM184BQ9ULE4 1060 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 TOPAZ1Q8N9V7 1692 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 USP17L10C9JJH3 530 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 SMIM22K7EJ46 135 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 SPOPO43791 374 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 TXNRD3Q86VQ6 643 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 LRRC45Q96CN5 670 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 CAMTA1Q9Y6Y1 1673 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 POLR2MP0CAP2 368 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 SNAP25P60880 206 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 SEPT2Q15019 361 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 CCDC25Q86WR0 208 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 SEPT12Q8IYM1 358 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 FAM133AQ8N9E0 248 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 NAP1L3Q99457 506 aaPredicted RBP20.38■□□□□ 0.85
USP48-204ENST00000400301 RASSF4Q9H2L5 321 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 PI4KBQ9UBF8 816 aa20.38■□□□□ 0.85
USP48-204ENST00000400301 WTIPA6NIX2 430 aaPredicted RBP20.37■□□□□ 0.85
USP48-204ENST00000400301 ZBTB5O15062 677 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 GJC1P36383 396 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 UBXN2AP68543 259 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 STK4Q13043 487 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 SYCE1Q8N0S2 351 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.37■□□□□ 0.851e-6■■■■■ 47.3
USP48-204ENST00000400301 XRN1Q8IZH2 1706 aaKnown RBP20.37■□□□□ 0.85
USP48-204ENST00000400301 STXBP3O00186 592 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 GUCY2DQ02846 1103 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 OTUD6BQ8N6M0 293 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 CSRNP1Q96S65 589 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 TRPC5Q9UL62 973 aaPredicted RBP20.37■□□□□ 0.85
USP48-204ENST00000400301 ITIH6Q6UXX5 1313 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 BACH1O14867 736 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 RAD54LQ92698 747 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 CAPN11Q9UMQ6 739 aa20.37■□□□□ 0.85
USP48-204ENST00000400301 CLEC10AQ8IUN9 316 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 JDP2Q8WYK2 163 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 TCHPQ9BT92 498 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 DHX36Q9H2U1 1008 aaKnown RBP20.36■□□□□ 0.85
USP48-204ENST00000400301 SPATA31A5Q5VU36 1347 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 SPATA31A7Q8IWB4 1347 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 E9PMD0 336 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 CLIC2O15247 247 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 RHOBTB3O94955 611 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 FTCDO95954 541 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 BMP3P12645 472 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 CTNNA2P26232 953 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 MRPS25P82663 173 aaKnown RBP20.36■□□□□ 0.85
USP48-204ENST00000400301 NSMFQ6X4W1 530 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 MTUS1Q9ULD2 1270 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 UTP11Q9Y3A2 253 aaKnown RBP20.36■□□□□ 0.85
USP48-204ENST00000400301 ATP6V0A2Q9Y487 856 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 FLT1P17948 1338 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 MTRF1LQ9UGC7 380 aaKnown RBP20.36■□□□□ 0.85
USP48-204ENST00000400301 ADAMTS1Q9UHI8 967 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 KIF1AQ12756 1690 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 FOXP2O15409 715 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms