RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CNKSR2Q8WXI2 1034 aa21.08■□□□□ 0.97
USP48-201ENST00000308271 UIMC1Q96RL1 719 aa21.08■□□□□ 0.97
USP48-201ENST00000308271 SH3BGRP55822 239 aaPredicted RBP21.08■□□□□ 0.96
USP48-201ENST00000308271 CORO7P57737 925 aa21.08■□□□□ 0.96
USP48-201ENST00000308271 IL9RQ01113 521 aa21.08■□□□□ 0.96
USP48-201ENST00000308271 NLRP14Q86W24 1093 aa21.08■□□□□ 0.96
USP48-201ENST00000308271 PSTPIP2Q9H939 334 aa21.08■□□□□ 0.96
USP48-201ENST00000308271 PTPRMP28827 1452 aa21.08■□□□□ 0.96
USP48-201ENST00000308271 EVI5O60447 810 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 PLEKHA8P1O95397 391 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 ZBTB21Q9ULJ3 1066 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 MEFVO15553 781 aaPredicted RBP21.07■□□□□ 0.96
USP48-201ENST00000308271 N4BP1O75113 896 aaKnown RBP21.07■□□□□ 0.96
USP48-201ENST00000308271 FXR1P51114 621 aaKnown RBP eCLIP21.07■□□□□ 0.965e-7■■■■□ 25.7
USP48-201ENST00000308271 CCNI2Q6ZMN8 369 aaPredicted RBP21.07■□□□□ 0.96
USP48-201ENST00000308271 GBP7Q8N8V2 638 aaPredicted RBP21.07■□□□□ 0.96
USP48-201ENST00000308271 SPZ1Q9BXG8 430 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 MYO3AQ8NEV4 1616 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 I3L4J1 428 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 ATP6V1G3Q96LB4 118 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 MLXIPQ9HAP2 919 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 CPDO75976 1380 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 FAM133BQ5BKY9 247 aaKnown RBP21.07■□□□□ 0.96
USP48-201ENST00000308271 CFAP157Q5JU67 520 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 HPCAL4Q9UM19 191 aa21.07■□□□□ 0.96
USP48-201ENST00000308271 EIF3HO15372 352 aaKnown RBP eCLIP21.06■□□□□ 0.961e-5■□□□□ 9.1
USP48-201ENST00000308271 PALMO75781 387 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 CYP2J2P51589 502 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 RASGRF1Q13972 1273 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 NFRKBQ6P4R8 1299 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 CD2APQ9Y5K6 639 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 BEND6Q5SZJ8 279 aaPredicted RBP21.06■□□□□ 0.96
USP48-201ENST00000308271 LGSNQ5TDP6 509 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 WDR78Q5VTH9 848 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 SNX12Q9UMY4 172 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 KIAA1024Q9UPX6 916 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 NRXN1Q9ULB1 1477 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 C6orf118Q5T5N4 469 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 RDH13Q8NBN7 331 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 TBCKQ8TEA7 893 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 SH3GLB2Q9NR46 395 aa21.06■□□□□ 0.96
USP48-201ENST00000308271 GRID2IPA4D2P6 1211 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 ALKBH5Q6P6C2 394 aaKnown RBP21.05■□□□□ 0.96
USP48-201ENST00000308271 NOP53Q9NZM5 478 aaKnown RBP21.05■□□□□ 0.96
USP48-201ENST00000308271 RTCBQ9Y3I0 505 aaKnown RBP21.05■□□□□ 0.96
USP48-201ENST00000308271 ATF2P15336 505 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 MAN1A1P33908 653 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 CHP1Q99653 195 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 ZMYND12Q9H0C1 365 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 DCAF8L1A6NGE4 600 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 RASGRF2O14827 1237 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 NT5C2P49902 561 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 ARHGEF18Q6ZSZ5 1173 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 NLRP10Q86W26 655 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 MAK16Q9BXY0 300 aaKnown RBP21.05■□□□□ 0.96
USP48-201ENST00000308271 MROH7-TTC4A0A0A0MT08 1334 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 DLC1Q96QB1 1528 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 PPP1R37O75864 691 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 ADCY2Q08462 1091 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 PPP2R5AQ15172 486 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 TTLL11Q8NHH1 800 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 LRRC8CQ8TDW0 803 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 AP1M1Q9BXS5 423 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 USTQ9Y2C2 406 aa21.05■□□□□ 0.96
USP48-201ENST00000308271 UFL1O94874 794 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 VPS41P49754 854 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 DRP2Q13474 957 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 VTI1AQ96AJ9 217 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 CEP72Q9P209 647 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 DYNLL1P63167 89 aaKnown RBP21.04■□□□□ 0.96
USP48-201ENST00000308271 INO80Q9ULG1 1556 aaPredicted RBP21.04■□□□□ 0.96
USP48-201ENST00000308271 LRRC53A6NM62 1247 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 PSMD1Q99460 953 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 PSMD14O00487 310 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 SART1O43290 800 aaKnown RBP21.04■□□□□ 0.96
USP48-201ENST00000308271 TBC1D1Q86TI0 1168 aaPredicted RBP21.04■□□□□ 0.96
USP48-201ENST00000308271 ANKRD35Q8N283 1001 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 IWS1Q96ST2 819 aa21.04■□□□□ 0.96
USP48-201ENST00000308271 ADGRB2O60241 1585 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 PPP2R2AP63151 447 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 ATP2C1P98194 919 aaPredicted RBP21.03■□□□□ 0.96
USP48-201ENST00000308271 DR1Q01658 176 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 ZKSCAN8Q15776 578 aaPredicted RBP21.03■□□□□ 0.96
USP48-201ENST00000308271 UNC13DQ70J99 1090 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 TPH2Q8IWU9 490 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 NOA1Q8NC60 698 aaKnown RBP21.03■□□□□ 0.96
USP48-201ENST00000308271 GJA10Q969M2 543 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 KLC4Q9NSK0 619 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 GCFC2P16383 781 aaKnown RBP21.03■□□□□ 0.96
USP48-201ENST00000308271 IRAK1P51617 712 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 TXLNGQ9NUQ3 528 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 L1RE1Q9UN81 338 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 hCG_1984214I3L0E3 225 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 KIF1CO43896 1103 aaKnown RBP21.03■□□□□ 0.96
USP48-201ENST00000308271 ZNF713Q8N859 430 aaPredicted RBP21.03■□□□□ 0.96
USP48-201ENST00000308271 LRRC1Q9BTT6 524 aa21.03■□□□□ 0.96
USP48-201ENST00000308271 FAM178BQ8IXR5 827 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 TAF1DQ9H5J8 278 aaPredicted RBP21.02■□□□□ 0.96
USP48-201ENST00000308271 BTG4Q9NY30 223 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 COL3A1P02461 1466 aaPredicted RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms