RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 RASEFQ8IZ41 740 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 PPP2R2CQ9Y2T4 447 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 TYW5A2RUC4 315 aaKnown RBP18.85■□□□□ 0.61
SHANK1-201ENST00000293441 HOXA13P31271 388 aaPredicted RBP18.85■□□□□ 0.61
SHANK1-201ENST00000293441 RASSF7Q02833 373 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 KSR1Q8IVT5 923 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 NACC1Q96RE7 527 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 TUBGCP2Q9BSJ2 902 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 SHROOM2Q13796 1616 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 CDC37Q16543 378 aaPredicted RBP18.85■□□□□ 0.61
SHANK1-201ENST00000293441 ZNF215Q9UL58 517 aaPredicted RBP18.85■□□□□ 0.61
SHANK1-201ENST00000293441 PTPN22Q9Y2R2 807 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 ERVK-7P63135 1459 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 PPP6R2O75170 966 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 ANKRD20A3Q5VUR7 823 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 NOP9Q86U38 636 aaKnown RBP18.85■□□□□ 0.61
SHANK1-201ENST00000293441 CDK8P49336 464 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 CACTINQ8WUQ7 758 aaKnown RBP18.85■□□□□ 0.61
SHANK1-201ENST00000293441 OSBP2Q969R2 916 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 FAM149B1Q96BN6 582 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.85■□□□□ 0.61
SHANK1-201ENST00000293441 NUF2Q9BZD4 464 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 CUEDC2Q9H467 287 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 PFDN6O15212 129 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 GSTA1P08263 222 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 GSTA2P09210 222 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 FAM186BQ8IYM0 893 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 UHMK1Q8TAS1 419 aaKnown RBP18.85■□□□□ 0.61
SHANK1-201ENST00000293441 COA1Q9GZY4 146 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 ATG3Q9NT62 314 aa18.85■□□□□ 0.61
SHANK1-201ENST00000293441 TRAPPC10P48553 1259 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 CDHR1Q96JP9 859 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 AK8Q96MA6 479 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 BSDC1Q9NW68 430 aaPredicted RBP18.84■□□□□ 0.61
SHANK1-201ENST00000293441 WHAMMP3Q1A5X7 153 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 C7orf31Q8N865 590 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 ESYT2A0FGR8 921 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 BPIFB4P59827 614 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 PIH1D3Q9NQM4 214 aaKnown RBP18.84■□□□□ 0.61
SHANK1-201ENST00000293441 ZSWIM5Q9P217 1185 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 BUB1BO60566 1050 aaPredicted RBP18.84■□□□□ 0.61
SHANK1-201ENST00000293441 AFPP02771 609 aaKnown RBP18.84■□□□□ 0.61
SHANK1-201ENST00000293441 EXOC8Q8IYI6 725 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 LRRN2O75325 713 aa18.84■□□□□ 0.61
SHANK1-201ENST00000293441 GCFC2P16383 781 aaKnown RBP18.84■□□□□ 0.61
SHANK1-201ENST00000293441 XPAP23025 273 aaPredicted RBP18.84■□□□□ 0.61
SHANK1-201ENST00000293441 TRIM56Q9BRZ2 755 aaKnown RBP18.84■□□□□ 0.61
SHANK1-201ENST00000293441 SGK1O00141 431 aa18.83■□□□□ 0.61
SHANK1-201ENST00000293441 SH2B2O14492 632 aaPredicted RBP18.83■□□□□ 0.61
SHANK1-201ENST00000293441 PPFIA1Q13136 1202 aa18.83■□□□□ 0.61
SHANK1-201ENST00000293441 ANAPC5Q9UJX4 755 aa18.83■□□□□ 0.61
SHANK1-201ENST00000293441 HECW2Q9P2P5 1572 aa18.83■□□□□ 0.61
SHANK1-201ENST00000293441 PSAPP07602 524 aa18.83■□□□□ 0.61
SHANK1-201ENST00000293441 ANKRD13CQ8N6S4 541 aa18.83■□□□□ 0.61
SHANK1-201ENST00000293441 RSRC1Q96IZ7 334 aaKnown RBP18.83■□□□□ 0.61
SHANK1-201ENST00000293441 CABS1Q96KC9 395 aa18.83■□□□□ 0.61
SHANK1-201ENST00000293441 NXF1Q9UBU9 619 aaKnown RBP18.83■□□□□ 0.61
SHANK1-201ENST00000293441 IPO11Q9UI26 975 aaKnown RBP18.83■□□□□ 0.61
SHANK1-201ENST00000293441 LMNB1P20700 586 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 ARHGAP24Q8N264 748 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 VCX3BQ9H321 246 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 PIM2Q9P1W9 311 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 ABCC12Q96J65 1359 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 SRGAP2CP0DJJ0 459 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 EIF2AK2P19525 551 aaKnown RBP18.83■□□□□ 0.6
SHANK1-201ENST00000293441 CACNB3P54284 484 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 PTPN12Q05209 780 aaKnown RBP18.83■□□□□ 0.6
SHANK1-201ENST00000293441 NR5A1Q13285 461 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 HLFQ16534 295 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 GRAMD1CQ8IYS0 662 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 NSUN7Q8NE18 718 aaKnown RBP18.83■□□□□ 0.6
SHANK1-201ENST00000293441 SLC38A10Q9HBR0 1119 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 TYW1Q9NV66 732 aaKnown RBP18.83■□□□□ 0.6
SHANK1-201ENST00000293441 CDC42BPGQ6DT37 1551 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 PCK1P35558 622 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 RASGRF1Q13972 1273 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 MAP7Q14244 749 aa18.83■□□□□ 0.6
SHANK1-201ENST00000293441 TROVE2P10155 538 aaKnown RBP eCLIP18.82■□□□□ 0.6
SHANK1-201ENST00000293441 SH3RF3Q8TEJ3 882 aaPredicted RBP18.82■□□□□ 0.6
SHANK1-201ENST00000293441 PSDA5PKW4 1024 aaPredicted RBP18.82■□□□□ 0.6
SHANK1-201ENST00000293441 MMP1P03956 469 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 MYL3P08590 195 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 ECE1P42892 770 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 SLC39A14Q15043 492 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 PDXDC2PQ6P474 469 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 OAS2P29728 719 aaKnown RBP18.82■□□□□ 0.6
SHANK1-201ENST00000293441 MAP7D3Q8IWC1 876 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 RPGRIP1Q96KN7 1286 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 MAGED2Q9UNF1 606 aaPredicted RBP18.82■□□□□ 0.6
SHANK1-201ENST00000293441 GOLGA8SH3BPF8 625 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 SLC4A1P02730 911 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 CHAMP1Q96JM3 812 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 HINFPQ9BQA5 517 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 MYO1FO00160 1098 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 FAM160B2Q86V87 743 aa18.82■□□□□ 0.6
SHANK1-201ENST00000293441 P2RX5Q93086 422 aa18.81■□□□□ 0.6
SHANK1-201ENST00000293441 PRR36Q9H6K5 1346 aa18.81■□□□□ 0.6
SHANK1-201ENST00000293441 EHHADHQ08426 723 aa18.81■□□□□ 0.6
SHANK1-201ENST00000293441 ATXN8OSP0DMR3 200 aa18.81■□□□□ 0.6
SHANK1-201ENST00000293441 CDC25AP30304 524 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms