RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 CEP55Q53EZ4 464 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 RWDD4Q6NW29 188 aaKnown RBP12.02□□□□□ -0.49
MSH6-201ENST00000234420 SNRNP27Q8WVK2 155 aaKnown RBP12.02□□□□□ -0.49
MSH6-201ENST00000234420 ZNF668Q96K58 619 aaPredicted RBP12.02□□□□□ -0.49
MSH6-201ENST00000234420 TRAIPQ9BWF2 469 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 PCDH11XQ9BZA7 1347 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 PCDH11YQ9BZA8 1340 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 RASSF10A6NK89 507 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 NLRP12P59046 1061 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 CACNB2Q08289 660 aaPredicted RBP12.02□□□□□ -0.49
MSH6-201ENST00000234420 SFMBT2Q5VUG0 894 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 NAA35Q5VZE5 725 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 ZBTB8OSQ8IWT0 167 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 TRIM58Q8NG06 486 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 NLRC4Q9NPP4 1024 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 COPRSQ9NQ92 184 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 CNGB3Q9NQW8 809 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 PTPN22Q9Y2R2 807 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 PIK3R4Q99570 1358 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 ESRRAP11474 423 aaPredicted RBP12.02□□□□□ -0.49
MSH6-201ENST00000234420 ZC3H12BQ5HYM0 836 aaKnown RBP12.02□□□□□ -0.49
MSH6-201ENST00000234420 FAM207AQ9NSI2 230 aaPredicted RBP12.02□□□□□ -0.49
MSH6-201ENST00000234420 PPP2R2CQ9Y2T4 447 aa12.02□□□□□ -0.49
MSH6-201ENST00000234420 SPAG7O75391 227 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 SLFN14P0C7P3 912 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 KCTD2Q14681 263 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 PPP2R5EQ16537 467 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 DCAF15Q66K64 600 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 FAM173BQ6P4H8 233 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 HDDC2Q7Z4H3 204 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 EXOC4Q96A65 974 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 AFF4Q9UHB7 1163 aaKnown RBP12.01□□□□□ -0.49
MSH6-201ENST00000234420 HYOU1Q9Y4L1 999 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 ARIH1Q9Y4X5 557 aaPredicted RBP12.01□□□□□ -0.49
MSH6-201ENST00000234420 APOA1P02647 267 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 NCF2P19878 526 aaPredicted RBP12.01□□□□□ -0.49
MSH6-201ENST00000234420 TCP11X2Q5H9J9 407 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 ASCC2Q9H1I8 757 aaPredicted RBP12.01□□□□□ -0.49
MSH6-201ENST00000234420 SYTL2Q9HCH5 934 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 KIF14Q15058 1648 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 WDR91A4D1P6 747 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 LMNB1P20700 586 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 TNFAIP1Q13829 316 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 KCTD1Q719H9 257 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 ASZ1Q8WWH4 475 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 THOC1Q96FV9 657 aaKnown RBP12.01□□□□□ -0.49
MSH6-201ENST00000234420 NLRP4Q96MN2 994 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 KCNH3Q9ULD8 1083 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 MYO10Q9HD67 2058 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 ADGRL1O94910 1474 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 KRT4P19013 534 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 C6orf118Q5T5N4 469 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 ZNF772Q68DY9 489 aaPredicted RBP12.01□□□□□ -0.49
MSH6-201ENST00000234420 CAPN10Q9HC96 672 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 INO80B-WBP1J3KQ70 363 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 ARHGDIAP52565 204 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 INO80BQ9C086 356 aaPredicted RBP12.01□□□□□ -0.49
MSH6-201ENST00000234420 UTP6Q9NYH9 597 aaKnown RBP12.01□□□□□ -0.49
MSH6-201ENST00000234420 ING2Q9H160 280 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 ATP11BQ9Y2G3 1177 aa12.01□□□□□ -0.49
MSH6-201ENST00000234420 PPEF1O14829 653 aaPredicted RBP12□□□□□ -0.49
MSH6-201ENST00000234420 DMPKQ09013 629 aa12□□□□□ -0.49
MSH6-201ENST00000234420 MYO1EQ12965 1108 aa12□□□□□ -0.49
MSH6-201ENST00000234420 PRPSAP1Q14558 356 aa12□□□□□ -0.49
MSH6-201ENST00000234420 FBXO18Q8NFZ0 1043 aa12□□□□□ -0.49
MSH6-201ENST00000234420 ATP6V0A1Q93050 837 aa12□□□□□ -0.49
MSH6-201ENST00000234420 TRIM8Q9BZR9 551 aa12□□□□□ -0.49
MSH6-201ENST00000234420 DIABLOQ9NR28 239 aa12□□□□□ -0.49
MSH6-201ENST00000234420 STMN3Q9NZ72 180 aa12□□□□□ -0.49
MSH6-201ENST00000234420 TMEM232C9JQI7 657 aa12□□□□□ -0.49
MSH6-201ENST00000234420 DDAH1O94760 285 aa12□□□□□ -0.49
MSH6-201ENST00000234420 IDI1Q13907 227 aa12□□□□□ -0.49
MSH6-201ENST00000234420 CNNM4Q6P4Q7 775 aa12□□□□□ -0.49
MSH6-201ENST00000234420 K7ENM7 598 aa12□□□□□ -0.49
MSH6-201ENST00000234420 DMP1Q13316 513 aaPredicted RBP12□□□□□ -0.49
MSH6-201ENST00000234420 SCN4BQ8IWT1 228 aa12□□□□□ -0.49
MSH6-201ENST00000234420 LRRC8AQ8IWT6 810 aa12□□□□□ -0.49
MSH6-201ENST00000234420 CCHCR1Q8TD31 782 aa12□□□□□ -0.49
MSH6-201ENST00000234420 ZNF202O95125 648 aa12□□□□□ -0.49
MSH6-201ENST00000234420 FOSL2P15408 326 aa12□□□□□ -0.49
MSH6-201ENST00000234420 MAIP1Q8WWC4 291 aa12□□□□□ -0.49
MSH6-201ENST00000234420 C6orf203Q9P0P8 240 aaPredicted RBP12□□□□□ -0.49
MSH6-201ENST00000234420 TBK1Q9UHD2 729 aa12□□□□□ -0.49
MSH6-201ENST00000234420 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12□□□□□ -0.49
MSH6-201ENST00000234420 GOLGA8HP0CJ92 632 aa12□□□□□ -0.49
MSH6-201ENST00000234420 KIF11P52732 1056 aa12□□□□□ -0.49
MSH6-201ENST00000234420 LLGL1Q15334 1064 aa12□□□□□ -0.49
MSH6-201ENST00000234420 SLC30A9Q6PML9 568 aa12□□□□□ -0.49
MSH6-201ENST00000234420 KIFC3Q9BVG8 833 aa12□□□□□ -0.49
MSH6-201ENST00000234420 ETF1P62495 437 aaKnown RBP11.99□□□□□ -0.49
MSH6-201ENST00000234420 RABGGTAQ92696 567 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 STAMQ92783 540 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 SMYD3Q9H7B4 428 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 SLC13A4Q9UKG4 626 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 PPIP5K1Q6PFW1 1433 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 POTEB3A0JP26 581 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 POTEBQ6S5H4 581 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 FBXL5Q9UKA1 691 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 GRK2P25098 689 aa11.99□□□□□ -0.49
MSH6-201ENST00000234420 U2AF1L4Q8WU68 220 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms