RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CUL5Q93034 780 aa23.36■■□□□ 1.33
PTCD3-220ENST00000627371 ZHX1Q9UKY1 873 aaPredicted RBP23.36■■□□□ 1.33
PTCD3-220ENST00000627371 DDX49Q9Y6V7 483 aaKnown RBP23.36■■□□□ 1.33
PTCD3-220ENST00000627371 STK36Q9NRP7 1315 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 MEIS2O14770 477 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 MSCO60682 206 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 DEXIO95424 95 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 CTDNEP1O95476 244 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 ACVR2BQ13705 512 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 ARHGEF16Q5VV41 709 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 USP17L6PQ6QN14 398 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 TEX2Q8IWB9 1127 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 SMARCC2Q8TAQ2 1214 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 ZSCAN31Q96LW9 406 aaPredicted RBP23.35■■□□□ 1.33
PTCD3-220ENST00000627371 PXMP2Q9NR77 195 aa23.35■■□□□ 1.33
PTCD3-220ENST00000627371 DDX20Q9UHI6 824 aaKnown RBP23.35■■□□□ 1.33
PTCD3-220ENST00000627371 SGPL1O95470 568 aa23.34■■□□□ 1.33
PTCD3-220ENST00000627371 ST3GAL1Q11201 340 aa23.34■■□□□ 1.33
PTCD3-220ENST00000627371 FCHSD1Q86WN1 690 aa23.34■■□□□ 1.33
PTCD3-220ENST00000627371 CCDC12Q8WUD4 166 aaPredicted RBP23.34■■□□□ 1.33
PTCD3-220ENST00000627371 IWS1Q96ST2 819 aa23.34■■□□□ 1.33
PTCD3-220ENST00000627371 CRISPLD2Q9H0B8 497 aa23.34■■□□□ 1.33
PTCD3-220ENST00000627371 VTA1Q9NP79 307 aa23.34■■□□□ 1.33
PTCD3-220ENST00000627371 RIC8AQ9NPQ8 531 aa23.34■■□□□ 1.33
PTCD3-220ENST00000627371 SH2B1Q9NRF2 756 aaPredicted RBP23.34■■□□□ 1.33
PTCD3-220ENST00000627371 FRMPD4Q14CM0 1322 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 ESYT2A0FGR8 921 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 AKR1A1P14550 325 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 CAPN2P17655 700 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 EIF2AK2P19525 551 aaKnown RBP23.33■■□□□ 1.33
PTCD3-220ENST00000627371 ADCY7P51828 1080 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 PDE4DQ08499 809 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 LHX8Q68G74 356 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 SHISA4Q96DD7 197 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 GLT8D2Q9H1C3 349 aa23.33■■□□□ 1.33
PTCD3-220ENST00000627371 SMCO2A6NFE2 343 aa23.32■■□□□ 1.32
PTCD3-220ENST00000627371 CAPN15O75808 1086 aa23.32■■□□□ 1.32
PTCD3-220ENST00000627371 UBE2SQ16763 222 aa23.32■■□□□ 1.32
PTCD3-220ENST00000627371 FBXO16Q8IX29 292 aaPredicted RBP23.32■■□□□ 1.32
PTCD3-220ENST00000627371 CCDC148Q8NFR7 591 aa23.32■■□□□ 1.32
PTCD3-220ENST00000627371 PDCD2LQ9BRP1 358 aa23.32■■□□□ 1.32
PTCD3-220ENST00000627371 ZMYND12Q9H0C1 365 aa23.32■■□□□ 1.32
PTCD3-220ENST00000627371 SH3GLB2Q9NR46 395 aa23.32■■□□□ 1.32
PTCD3-220ENST00000627371 EN2P19622 333 aaPredicted RBP23.31■■□□□ 1.32
PTCD3-220ENST00000627371 MCM2P49736 904 aa23.31■■□□□ 1.32
PTCD3-220ENST00000627371 PGM5Q15124 567 aa23.31■■□□□ 1.32
PTCD3-220ENST00000627371 CCDC144BQ3MJ40 725 aa23.31■■□□□ 1.32
PTCD3-220ENST00000627371 EEPD1Q7L9B9 569 aa23.31■■□□□ 1.32
PTCD3-220ENST00000627371 NSUN7Q8NE18 718 aaKnown RBP23.31■■□□□ 1.32
PTCD3-220ENST00000627371 VPS54Q9P1Q0 977 aa23.31■■□□□ 1.32
PTCD3-220ENST00000627371 FAM184BQ9ULE4 1060 aa23.31■■□□□ 1.32
PTCD3-220ENST00000627371 CD2BP2O95400 341 aaKnown RBP23.3■■□□□ 1.32
PTCD3-220ENST00000627371 NR3C2P08235 984 aa23.3■■□□□ 1.32
PTCD3-220ENST00000627371 STXBP2Q15833 593 aa23.3■■□□□ 1.32
PTCD3-220ENST00000627371 TAPT1Q6NXT6 567 aa23.3■■□□□ 1.32
PTCD3-220ENST00000627371 CCDC83Q8IWF9 413 aa23.3■■□□□ 1.32
PTCD3-220ENST00000627371 OGDHLQ9ULD0 1010 aa23.3■■□□□ 1.32
PTCD3-220ENST00000627371 SPDYE3A6NKU9 549 aa23.29■■□□□ 1.32
PTCD3-220ENST00000627371 TFRCP02786 760 aaKnown RBP23.29■■□□□ 1.32
PTCD3-220ENST00000627371 RARBP10826 455 aa23.29■■□□□ 1.32
PTCD3-220ENST00000627371 GNA11P29992 359 aa23.29■■□□□ 1.32
PTCD3-220ENST00000627371 CLK2P49760 499 aaKnown RBP23.29■■□□□ 1.32
PTCD3-220ENST00000627371 ANO1Q5XXA6 986 aa23.29■■□□□ 1.32
PTCD3-220ENST00000627371 FAM177A1Q8N128 213 aaPredicted RBP23.29■■□□□ 1.32
PTCD3-220ENST00000627371 AIFM3Q96NN9 605 aa23.29■■□□□ 1.32
PTCD3-220ENST00000627371 C6orf50Q9HD87 102 aa23.29■■□□□ 1.32
PTCD3-220ENST00000627371 ORC3Q9UBD5 711 aaPredicted RBP23.29■■□□□ 1.32
PTCD3-220ENST00000627371 MKI67P46013 3256 aaKnown RBP23.29■■□□□ 1.32
PTCD3-220ENST00000627371 MYH7BA7E2Y1 1941 aa23.29■■□□□ 1.32
PTCD3-220ENST00000627371 VSIG10LQ86VR7 867 aa23.28■■□□□ 1.32
PTCD3-220ENST00000627371 IL31RAQ8NI17 732 aa23.28■■□□□ 1.32
PTCD3-220ENST00000627371 LLPHQ9BRT6 129 aaKnown RBP23.28■■□□□ 1.32
PTCD3-220ENST00000627371 PDGFCQ9NRA1 345 aa23.28■■□□□ 1.32
PTCD3-220ENST00000627371 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.27■■□□□ 1.32
PTCD3-220ENST00000627371 RBM47A0AV96 593 aaKnown RBP23.27■■□□□ 1.32
PTCD3-220ENST00000627371 ADCY6O43306 1168 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 JAK2O60674 1132 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 DTNBO60941 627 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 EIF3JO75822 258 aaKnown RBP23.27■■□□□ 1.32
PTCD3-220ENST00000627371 FDPSP14324 419 aaKnown RBP23.27■■□□□ 1.32
PTCD3-220ENST00000627371 CCND2P30279 289 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 ADCYAP1R1P41586 468 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 AP3B2Q13367 1082 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 IQSEC1Q6DN90 963 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 ANKLE1Q8NAG6 615 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 WASF1Q92558 559 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 LENG1Q96BZ8 264 aaPredicted RBP23.27■■□□□ 1.32
PTCD3-220ENST00000627371 PCDHA6Q9UN73 950 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 PCDHA8Q9Y5H6 950 aa23.27■■□□□ 1.32
PTCD3-220ENST00000627371 DUSP11O75319 330 aaKnown RBP23.26■■□□□ 1.31
PTCD3-220ENST00000627371 FOSP01100 380 aaPredicted RBP23.26■■□□□ 1.31
PTCD3-220ENST00000627371 MYCLP12524 364 aaPredicted RBP23.26■■□□□ 1.31
PTCD3-220ENST00000627371 TNFAIP2Q03169 654 aa23.26■■□□□ 1.31
PTCD3-220ENST00000627371 BICD2Q8TD16 824 aa23.26■■□□□ 1.31
PTCD3-220ENST00000627371 SCFD2Q8WU76 684 aa23.26■■□□□ 1.31
PTCD3-220ENST00000627371 EHMT1Q9H9B1 1298 aa23.26■■□□□ 1.31
PTCD3-220ENST00000627371 XPNPEP3Q9NQH7 507 aa23.26■■□□□ 1.31
PTCD3-220ENST00000627371 NLRP5P59047 1200 aa23.25■■□□□ 1.31
PTCD3-220ENST00000627371 PCNX4Q63HM2 1172 aa23.25■■□□□ 1.31
PTCD3-220ENST00000627371 MCTP2Q6DN12 878 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms