RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 WWC2Q6AWC2 1192 aa29.66■■■□□ 2.34
TRIM28-204ENST00000594806 BARHL2Q9NY43 387 aa29.66■■■□□ 2.34
TRIM28-204ENST00000594806 RARBP10826 455 aa29.65■■■□□ 2.34
TRIM28-204ENST00000594806 NAPAP54920 295 aa29.65■■■□□ 2.34
TRIM28-204ENST00000594806 STK3Q13188 491 aa29.65■■■□□ 2.34
TRIM28-204ENST00000594806 SMARCC2Q8TAQ2 1214 aa29.65■■■□□ 2.34
TRIM28-204ENST00000594806 CCDC12Q8WUD4 166 aaPredicted RBP29.65■■■□□ 2.34
TRIM28-204ENST00000594806 TBC1D32Q96NH3 1257 aa29.65■■■□□ 2.34
TRIM28-204ENST00000594806 PXMP2Q9NR77 195 aa29.65■■■□□ 2.34
TRIM28-204ENST00000594806 HOXA13P31271 388 aaPredicted RBP29.64■■■□□ 2.34
TRIM28-204ENST00000594806 SSRP1Q08945 709 aaKnown RBP29.64■■■□□ 2.34
TRIM28-204ENST00000594806 SCRN1Q12765 414 aa29.64■■■□□ 2.34
TRIM28-204ENST00000594806 CCDC144BQ3MJ40 725 aa29.64■■■□□ 2.34
TRIM28-204ENST00000594806 ARRDC4Q8NCT1 418 aa29.64■■■□□ 2.34
TRIM28-204ENST00000594806 GPKOWQ92917 476 aaPredicted RBP eCLIP29.64■■■□□ 2.34
TRIM28-204ENST00000594806 SLC26A6Q9BXS9 759 aa29.64■■■□□ 2.34
TRIM28-204ENST00000594806 LRRC37A2A6NM11 1700 aa29.63■■■□□ 2.33
TRIM28-204ENST00000594806 STXBP3O00186 592 aa29.63■■■□□ 2.33
TRIM28-204ENST00000594806 MEIS2O14770 477 aa29.63■■■□□ 2.33
TRIM28-204ENST00000594806 STXBP2Q15833 593 aa29.63■■■□□ 2.33
TRIM28-204ENST00000594806 IQSEC1Q6DN90 963 aa29.63■■■□□ 2.33
TRIM28-204ENST00000594806 PHKBQ93100 1093 aa29.63■■■□□ 2.33
TRIM28-204ENST00000594806 DUSP11O75319 330 aaKnown RBP29.62■■■□□ 2.33
TRIM28-204ENST00000594806 PKN1Q16512 942 aa29.62■■■□□ 2.33
TRIM28-204ENST00000594806 TAPT1Q6NXT6 567 aa29.62■■■□□ 2.33
TRIM28-204ENST00000594806 RIC8AQ9NPQ8 531 aa29.62■■■□□ 2.33
TRIM28-204ENST00000594806 LIMCH1Q9UPQ0 1083 aa29.62■■■□□ 2.33
TRIM28-204ENST00000594806 RBM47A0AV96 593 aaKnown RBP29.61■■■□□ 2.33
TRIM28-204ENST00000594806 ESYT2A0FGR8 921 aa29.61■■■□□ 2.33
TRIM28-204ENST00000594806 FARP2O94887 1054 aaPredicted RBP29.61■■■□□ 2.33
TRIM28-204ENST00000594806 DEXIO95424 95 aa29.61■■■□□ 2.33
TRIM28-204ENST00000594806 NR3C2P08235 984 aa29.61■■■□□ 2.33
TRIM28-204ENST00000594806 ME3Q16798 604 aa29.61■■■□□ 2.33
TRIM28-204ENST00000594806 FCHSD1Q86WN1 690 aa29.61■■■□□ 2.33
TRIM28-204ENST00000594806 FAM177A1Q8N128 213 aaPredicted RBP29.61■■■□□ 2.33
TRIM28-204ENST00000594806 PDCD2LQ9BRP1 358 aa29.61■■■□□ 2.33
TRIM28-204ENST00000594806 EIF3JO75822 258 aaKnown RBP29.6■■■□□ 2.33
TRIM28-204ENST00000594806 EIF2AK2P19525 551 aaKnown RBP29.6■■■□□ 2.33
TRIM28-204ENST00000594806 USP17L6PQ6QN14 398 aa29.6■■■□□ 2.33
TRIM28-204ENST00000594806 EEPD1Q7L9B9 569 aa29.6■■■□□ 2.33
TRIM28-204ENST00000594806 FBXO16Q8IX29 292 aaPredicted RBP29.6■■■□□ 2.33
TRIM28-204ENST00000594806 ZSCAN31Q96LW9 406 aaPredicted RBP29.6■■■□□ 2.33
TRIM28-204ENST00000594806 SH3GLB2Q9NR46 395 aa29.6■■■□□ 2.33
TRIM28-204ENST00000594806 FRMPD4Q14CM0 1322 aa29.6■■■□□ 2.33
TRIM28-204ENST00000594806 SMCO2A6NFE2 343 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 ST18O60284 1047 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 ADCY7P51828 1080 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 TNFAIP2Q03169 654 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 TYW1BQ6NUM6 668 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 UBE2Q1Q7Z7E8 422 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 CCDC148Q8NFR7 591 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 GTF3C6Q969F1 213 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 SPC25Q9HBM1 224 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 XPNPEP3Q9NQH7 507 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 Q9Y3F1 56 aa29.59■■■□□ 2.33
TRIM28-204ENST00000594806 DNM1LO00429 736 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 STAM2O75886 525 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 FOSP01100 380 aaPredicted RBP29.58■■■□□ 2.33
TRIM28-204ENST00000594806 GNA11P29992 359 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 PGM5Q15124 567 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 KIAA1217Q5T5P2 1943 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 MCTP2Q6DN12 878 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 XRRA1Q6P2D8 792 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 NOL8Q76FK4 1167 aaKnown RBP29.58■■■□□ 2.33
TRIM28-204ENST00000594806 VSIG10LQ86VR7 867 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 SCFD2Q8WU76 684 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 ZMYND12Q9H0C1 365 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 EHMT1Q9H9B1 1298 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 STK36Q9NRP7 1315 aa29.58■■■□□ 2.33
TRIM28-204ENST00000594806 DDX49Q9Y6V7 483 aaKnown RBP29.58■■■□□ 2.33
TRIM28-204ENST00000594806 SPDYE3A6NKU9 549 aa29.57■■■□□ 2.32
TRIM28-204ENST00000594806 NKRFO15226 690 aaKnown RBP eCLIP29.57■■■□□ 2.324e-8■□□□□ 11.1
TRIM28-204ENST00000594806 CCND2P30279 289 aa29.57■■■□□ 2.32
TRIM28-204ENST00000594806 ANO1Q5XXA6 986 aa29.57■■■□□ 2.32
TRIM28-204ENST00000594806 NECAB2Q7Z6G3 386 aa29.57■■■□□ 2.32
TRIM28-204ENST00000594806 RNF180Q86T96 592 aa29.57■■■□□ 2.32
TRIM28-204ENST00000594806 C6orf50Q9HD87 102 aa29.57■■■□□ 2.32
TRIM28-204ENST00000594806 SH2B1Q9NRF2 756 aaPredicted RBP29.57■■■□□ 2.32
TRIM28-204ENST00000594806 ADCYAP1R1P41586 468 aa29.56■■■□□ 2.32
TRIM28-204ENST00000594806 NKX3-2P78367 333 aa29.56■■■□□ 2.32
TRIM28-204ENST00000594806 MLLT1Q03111 559 aaPredicted RBP29.56■■■□□ 2.32
TRIM28-204ENST00000594806 DUSP28Q4G0W2 176 aa29.56■■■□□ 2.32
TRIM28-204ENST00000594806 PDGFCQ9NRA1 345 aa29.56■■■□□ 2.32
TRIM28-204ENST00000594806 GNEQ9Y223 722 aaKnown RBP29.56■■■□□ 2.32
TRIM28-204ENST00000594806 MNX1P50219 401 aaPredicted RBP29.55■■■□□ 2.32
TRIM28-204ENST00000594806 AP3B2Q13367 1082 aa29.55■■■□□ 2.32
TRIM28-204ENST00000594806 TTLL4Q14679 1199 aa29.55■■■□□ 2.32
TRIM28-204ENST00000594806 KCNV1Q6PIU1 500 aa29.55■■■□□ 2.32
TRIM28-204ENST00000594806 BICD2Q8TD16 824 aa29.55■■■□□ 2.32
TRIM28-204ENST00000594806 WDR11Q9BZH6 1224 aa29.55■■■□□ 2.32
TRIM28-204ENST00000594806 UPF3AQ9H1J1 476 aaKnown RBP29.55■■■□□ 2.32
TRIM28-204ENST00000594806 BRCA2P51587 3418 aa29.55■■■□□ 2.32
TRIM28-204ENST00000594806 KBTBD13C9JR72 458 aa29.54■■■□□ 2.32
TRIM28-204ENST00000594806 LARGE1O95461 756 aa29.54■■■□□ 2.32
TRIM28-204ENST00000594806 MYCLP12524 364 aaPredicted RBP29.54■■■□□ 2.32
TRIM28-204ENST00000594806 SMPD1P17405 629 aa29.54■■■□□ 2.32
TRIM28-204ENST00000594806 GJA9P57773 515 aa29.54■■■□□ 2.32
TRIM28-204ENST00000594806 LRRC41Q15345 812 aa29.54■■■□□ 2.32
TRIM28-204ENST00000594806 WASF1Q92558 559 aa29.54■■■□□ 2.32
TRIM28-204ENST00000594806 PAWRQ96IZ0 340 aaKnown RBP29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms