RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 SYNE3Q6ZMZ3 975 aa23.66■■□□□ 1.38
SS18-224ENST00000584083 DHX32Q7L7V1 743 aaKnown RBP23.66■■□□□ 1.38
SS18-224ENST00000584083 RAB11FIP4Q86YS3 637 aa23.66■■□□□ 1.38
SS18-224ENST00000584083 SCFD2Q8WU76 684 aa23.66■■□□□ 1.38
SS18-224ENST00000584083 RRP36Q96EU6 259 aaKnown RBP23.66■■□□□ 1.38
SS18-224ENST00000584083 LZTS2Q9BRK4 669 aa23.66■■□□□ 1.38
SS18-224ENST00000584083 SPZ1Q9BXG8 430 aa23.66■■□□□ 1.38
SS18-224ENST00000584083 EIF2AK2P19525 551 aaKnown RBP23.65■■□□□ 1.38
SS18-224ENST00000584083 FXR1P51114 621 aaKnown RBP eCLIP23.65■■□□□ 1.38
SS18-224ENST00000584083 HSD17B4P51659 736 aa23.65■■□□□ 1.38
SS18-224ENST00000584083 PPP2R5BQ15173 497 aa23.65■■□□□ 1.38
SS18-224ENST00000584083 ADCK5Q3MIX3 580 aa23.65■■□□□ 1.38
SS18-224ENST00000584083 TCEANC2Q96MN5 208 aa23.65■■□□□ 1.38
SS18-224ENST00000584083 IWS1Q96ST2 819 aa23.65■■□□□ 1.38
SS18-224ENST00000584083 PDLIM7Q9NR12 457 aa23.65■■□□□ 1.38
SS18-224ENST00000584083 MAP3K20Q9NYL2 800 aaKnown RBP23.65■■□□□ 1.38
SS18-224ENST00000584083 KIAA1217Q5T5P2 1943 aa23.65■■□□□ 1.38
SS18-224ENST00000584083 DCDC2CA8MYV0 355 aa23.64■■□□□ 1.37
SS18-224ENST00000584083 REC8O95072 547 aa23.64■■□□□ 1.37
SS18-224ENST00000584083 PLEKHA8P1O95397 391 aa23.64■■□□□ 1.37
SS18-224ENST00000584083 SLC34A2O95436 690 aa23.64■■□□□ 1.37
SS18-224ENST00000584083 SMARCA1P28370 1054 aa23.64■■□□□ 1.37
SS18-224ENST00000584083 HOXA13P31271 388 aaPredicted RBP23.64■■□□□ 1.37
SS18-224ENST00000584083 STXBP2Q15833 593 aa23.64■■□□□ 1.37
SS18-224ENST00000584083 CXCL17Q6UXB2 119 aa23.64■■□□□ 1.37
SS18-224ENST00000584083 OR6J1Q8NGC5 347 aa23.64■■□□□ 1.37
SS18-224ENST00000584083 SEC63Q9UGP8 760 aaKnown RBP23.64■■□□□ 1.37
SS18-224ENST00000584083 A0A0U1RQG5 324 aaPredicted RBP23.63■■□□□ 1.37
SS18-224ENST00000584083 GCOM1H8Y6P7 765 aaPredicted RBP23.63■■□□□ 1.37
SS18-224ENST00000584083 CLTBP09497 229 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 POLR2MP0CAP2 368 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 TXNP10599 105 aaKnown RBP23.63■■□□□ 1.37
SS18-224ENST00000584083 EXOSC10Q01780 885 aaKnown RBP23.63■■□□□ 1.37
SS18-224ENST00000584083 GHRHRQ02643 423 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 SEPT14Q6ZU15 432 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 SH3RF1Q7Z6J0 888 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 SGMS1Q86VZ5 419 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 MICU3Q86XE3 530 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 CMTR1Q8N1G2 835 aaKnown RBP23.63■■□□□ 1.37
SS18-224ENST00000584083 SRBD1Q8N5C6 995 aaKnown RBP23.63■■□□□ 1.37
SS18-224ENST00000584083 SAMD3Q8N6K7 520 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 FANCBQ8NB91 859 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 PXMP2Q9NR77 195 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 LTBP2Q14767 1821 aa23.63■■□□□ 1.37
SS18-224ENST00000584083 NKRFO15226 690 aaKnown RBP eCLIP23.62■■□□□ 1.37
SS18-224ENST00000584083 CABYRO75952 493 aa23.62■■□□□ 1.37
SS18-224ENST00000584083 HMGB1P09429 215 aaKnown RBP23.62■■□□□ 1.37
SS18-224ENST00000584083 TTLL4Q14679 1199 aa23.62■■□□□ 1.37
SS18-224ENST00000584083 ANKRD33Q7Z3H0 272 aa23.62■■□□□ 1.37
SS18-224ENST00000584083 TMEM39AQ9NV64 488 aa23.62■■□□□ 1.37
SS18-224ENST00000584083 MROH7Q68CQ1 1323 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 TRIM43BA6NCK2 446 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 ARVCFO00192 962 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 NR3C2P08235 984 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 HSPA4P34932 840 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 CPT1AP50416 773 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 FGD1P98174 961 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 FCHSD1Q86WN1 690 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 CCDC82Q8N4S0 544 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 TRIM43Q96BQ3 446 aaPredicted RBP23.61■■□□□ 1.37
SS18-224ENST00000584083 TOX2Q96NM4 488 aa23.61■■□□□ 1.37
SS18-224ENST00000584083 RANBP2P49792 3224 aaKnown RBP23.61■■□□□ 1.37
SS18-224ENST00000584083 EIF3JO75822 258 aaKnown RBP23.6■■□□□ 1.37
SS18-224ENST00000584083 MYCLP12524 364 aaPredicted RBP23.6■■□□□ 1.37
SS18-224ENST00000584083 CDK7P50613 346 aa23.6■■□□□ 1.37
SS18-224ENST00000584083 BRDTQ58F21 947 aaPredicted RBP23.6■■□□□ 1.37
SS18-224ENST00000584083 APOA5Q6Q788 366 aa23.6■■□□□ 1.37
SS18-224ENST00000584083 TDHQ8IZJ6 230 aa23.6■■□□□ 1.37
SS18-224ENST00000584083 COPS5Q92905 334 aa23.6■■□□□ 1.37
SS18-224ENST00000584083 BADQ92934 168 aa23.6■■□□□ 1.37
SS18-224ENST00000584083 KCNB2Q92953 911 aa23.6■■□□□ 1.37
SS18-224ENST00000584083 JAKMIP1Q96N16 626 aaKnown RBP23.6■■□□□ 1.37
SS18-224ENST00000584083 SNX14Q9Y5W7 946 aa23.6■■□□□ 1.37
SS18-224ENST00000584083 MYL3P08590 195 aa23.59■■□□□ 1.37
SS18-224ENST00000584083 RAG1P15918 1043 aa23.59■■□□□ 1.37
SS18-224ENST00000584083 FAAP100Q0VG06 881 aa23.59■■□□□ 1.37
SS18-224ENST00000584083 TMTC3Q6ZXV5 915 aa23.59■■□□□ 1.37
SS18-224ENST00000584083 PDCD2LQ9BRP1 358 aa23.59■■□□□ 1.37
SS18-224ENST00000584083 POLR3EQ9NVU0 708 aa23.59■■□□□ 1.37
SS18-224ENST00000584083 NAP1L2Q9ULW6 460 aaPredicted RBP23.59■■□□□ 1.37
SS18-224ENST00000584083 MYH7BA7E2Y1 1941 aa23.59■■□□□ 1.37
SS18-224ENST00000584083 KIAA0355O15063 1070 aa23.58■■□□□ 1.37
SS18-224ENST00000584083 TLR3O15455 904 aaKnown RBP23.58■■□□□ 1.37
SS18-224ENST00000584083 ZBTB43O43298 467 aa23.58■■□□□ 1.37
SS18-224ENST00000584083 ARIH2O95376 493 aa23.58■■□□□ 1.37
SS18-224ENST00000584083 CPA1P15085 419 aa23.58■■□□□ 1.37
SS18-224ENST00000584083 ITGA7Q13683 1181 aa23.58■■□□□ 1.37
SS18-224ENST00000584083 CCDC62Q6P9F0 684 aa23.58■■□□□ 1.37
SS18-224ENST00000584083 BRPF3Q9ULD4 1205 aa23.58■■□□□ 1.37
SS18-224ENST00000584083 KLF18A0A0U1RQI7 1052 aa23.57■■□□□ 1.36
SS18-224ENST00000584083 hCG_1642624A0A1W2PR95 340 aa23.57■■□□□ 1.36
SS18-224ENST00000584083 PSMC6P62333 389 aa23.57■■□□□ 1.36
SS18-224ENST00000584083 RTN1Q16799 776 aa23.57■■□□□ 1.36
SS18-224ENST00000584083 LY6KQ17RY6 165 aa23.57■■□□□ 1.36
SS18-224ENST00000584083 BLOC1S2Q6QNY1 142 aa23.57■■□□□ 1.36
SS18-224ENST00000584083 CUL5Q93034 780 aa23.57■■□□□ 1.36
SS18-224ENST00000584083 RBM28Q9NW13 759 aaKnown RBP23.57■■□□□ 1.36
SS18-224ENST00000584083 GH1P01241 217 aa23.56■■□□□ 1.36
SS18-224ENST00000584083 CCND2P30279 289 aa23.56■■□□□ 1.36
SS18-224ENST00000584083 PGM5Q15124 567 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms