RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ANKRD40Q6AI12 368 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 KIAA0895Q8NCT3 520 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 FGFBP2Q9BYJ0 223 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 BCAS3Q9H6U6 928 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 LZTFL1Q9NQ48 299 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 POTEB3A0JP26 581 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 POTECB2RU33 542 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 LAD1O00515 517 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 MEIS2O14770 477 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 ABL1P00519 1130 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 CLK2P49760 499 aaKnown RBP12.43□□□□□ -0.42
CUX1-212ENST00000547394 POTEBQ6S5H4 581 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 PPFIBP1Q86W92 1011 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 ANO3Q9BYT9 981 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 ZMYND15Q9H091 742 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 ZHX3Q9H4I2 956 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 RMND1Q9NWS8 449 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 NYAP2Q9P242 653 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 PPP2R2CQ9Y2T4 447 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 B4DLN1 442 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 BMP3P12645 472 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 PRAMEF18Q5VWM3 479 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 RAD9BQ6WBX8 426 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 REXO1L1PQ8IX06 675 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 MRPL44Q9H9J2 332 aaKnown RBP12.43□□□□□ -0.42
CUX1-212ENST00000547394 TMOD2Q9NZR1 351 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 PCDHA12Q9UN75 941 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 TFR2Q9UP52 801 aa12.43□□□□□ -0.42
CUX1-212ENST00000547394 AKR1B15C9JRZ8 316 aaPredicted RBP12.42□□□□□ -0.42
CUX1-212ENST00000547394 NRDCO43847 1150 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 CXCL9Q07325 125 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 TMEM266Q2M3C6 531 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 SYDE2Q5VT97 1194 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 CSGALNACT2Q8N6G5 542 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 GIMAP8Q8ND71 665 aaPredicted RBP12.42□□□□□ -0.42
CUX1-212ENST00000547394 LARP4BQ92615 738 aaKnown RBP12.42□□□□□ -0.42
CUX1-212ENST00000547394 KIAA1024Q9UPX6 916 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 QSER1Q2KHR3 1735 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 POTEFA5A3E0 1075 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 OPLAHO14841 1288 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 RHOBTB3O94955 611 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 CFBP00751 764 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 POTEIP0CG38 1075 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 HDLBPQ00341 1268 aaKnown RBP12.42□□□□□ -0.42
CUX1-212ENST00000547394 CYP4A11Q02928 519 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 FILIP1LQ4L180 1135 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 KRT79Q5XKE5 535 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 POTEGQ6S5H5 508 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 POTEEQ6S8J3 1075 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 SV2BQ7L1I2 683 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 FBXO11Q86XK2 927 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 MTMR8Q96EF0 704 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 WDR24Q96S15 920 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 DUSP9Q99956 384 aaKnown RBP12.42□□□□□ -0.42
CUX1-212ENST00000547394 PRR12Q9ULL5 1215 aa12.42□□□□□ -0.42
CUX1-212ENST00000547394 MYH7BA7E2Y1 1941 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 FAM86B1E9PN63 330 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 PSMA7O14818 248 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 FAM86B2P0C5J1 330 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 ACRBPQ8NEB7 543 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 DDX12PQ92771 950 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 MKL1Q969V6 931 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 AK8Q96MA6 479 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 CNTNAP1P78357 1384 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 MYO3BQ8WXR4 1341 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 PBX1P40424 430 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 BAG6P46379 1132 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 PSMC6P62333 389 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 NCBP1Q09161 790 aaKnown RBP12.41□□□□□ -0.42
CUX1-212ENST00000547394 TTI2Q6NXR4 508 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 TRMT1LQ7Z2T5 733 aaKnown RBP12.41□□□□□ -0.42
CUX1-212ENST00000547394 KIF18AQ8NI77 898 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 DCAF4Q8WV16 495 aa12.41□□□□□ -0.42
CUX1-212ENST00000547394 PYM1Q9BRP8 204 aaKnown RBP12.41□□□□□ -0.42
CUX1-212ENST00000547394 TFRCP02786 760 aaKnown RBP12.4□□□□□ -0.42
CUX1-212ENST00000547394 ARHGAP4P98171 946 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 NCAPH2Q6IBW4 605 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 SUPT20HQ8NEM7 779 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 GMLQ99445 158 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 AMNQ9BXJ7 453 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 PDCL3Q9H2J4 239 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 SEMA6BQ9H3T3 888 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 PKD2L1Q9P0L9 805 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 CHMP2AO43633 222 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 ENTPD3O75355 529 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 VIL1P09327 827 aaKnown RBP12.4□□□□□ -0.42
CUX1-212ENST00000547394 FXR2P51116 673 aaKnown RBP eCLIP12.4□□□□□ -0.42
CUX1-212ENST00000547394 TRIM65Q6PJ69 517 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 SAMD7Q7Z3H4 446 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 NELFCDQ8IXH7 590 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 NIM1KQ8IY84 436 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 CHP1Q99653 195 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 MRIQ9BWK5 157 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 ZBTB21Q9ULJ3 1066 aa12.4□□□□□ -0.42
CUX1-212ENST00000547394 WNT10BO00744 389 aa12.4□□□□□ -0.43
CUX1-212ENST00000547394 ARHGAP6O43182 974 aa12.4□□□□□ -0.43
CUX1-212ENST00000547394 MFAP3LO75121 409 aa12.4□□□□□ -0.43
CUX1-212ENST00000547394 MED24O75448 989 aa12.4□□□□□ -0.43
CUX1-212ENST00000547394 HMGB2P26583 209 aaKnown RBP12.4□□□□□ -0.43
CUX1-212ENST00000547394 GNG11P61952 73 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms