RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 RMDN3Q96TC7 470 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 MTA3Q9BTC8 594 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 MTIF3Q9H2K0 278 aaKnown RBP10.88□□□□□ -0.67
YBX3-218ENST00000546298 HIPK3Q9H422 1215 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 MAD2L2Q9UI95 211 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 SMCHD1A6NHR9 2005 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 A6NJR5 290 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 EIF3JO75822 258 aaKnown RBP10.87□□□□□ -0.67
YBX3-218ENST00000546298 CFBP00751 764 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 GH1P01241 217 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 NR3C2P08235 984 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 CSF2RAP15509 400 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 PSMC6P62333 389 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 PURAQ00577 322 aaKnown RBP10.87□□□□□ -0.67
YBX3-218ENST00000546298 TMEM63BQ5T3F8 832 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 SEPT14Q6ZU15 432 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 RPUSD2Q8IZ73 545 aaKnown RBP10.87□□□□□ -0.67
YBX3-218ENST00000546298 MTMR8Q96EF0 704 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 ALDH8A1Q9H2A2 487 aaPredicted RBP10.87□□□□□ -0.67
YBX3-218ENST00000546298 RIOX1Q9H6W3 641 aa10.87□□□□□ -0.67
YBX3-218ENST00000546298 RBM8AQ9Y5S9 174 aaKnown RBP10.87□□□□□ -0.67
YBX3-218ENST00000546298 ZNFX1Q9P2E3 1918 aaKnown RBP10.87□□□□□ -0.67
YBX3-218ENST00000546298 GRIN2DO15399 1336 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 BRCA2P51587 3418 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 PNMA6FA0A0J9YX94 578 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 GCOM1H8Y6P7 765 aaPredicted RBP10.86□□□□□ -0.67
YBX3-218ENST00000546298 B4GALT4O60513 344 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 FGBP02675 491 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 POLR2MP0CAP2 368 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 EIF2AK2P19525 551 aaKnown RBP10.86□□□□□ -0.67
YBX3-218ENST00000546298 PTGS1P23219 599 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 KIF5BP33176 963 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 CYP2C18P33260 490 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 GNAQP50148 359 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 HSD17B4P51659 736 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 GHRHRQ02643 423 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 PTPN11Q06124 597 aaPredicted RBP10.86□□□□□ -0.67
YBX3-218ENST00000546298 TROAPQ12815 778 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 TMEM240Q5SV17 173 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 CCDC62Q6P9F0 684 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 KCNV1Q6PIU1 500 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 CASC1Q6TDU7 716 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 CENPQQ7L2Z9 268 aaPredicted RBP10.86□□□□□ -0.67
YBX3-218ENST00000546298 HOMER1Q86YM7 354 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 CTCFLQ8NI51 663 aaPredicted RBP10.86□□□□□ -0.67
YBX3-218ENST00000546298 PIGSQ96S52 555 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 MAP3K14Q99558 947 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.86□□□□□ -0.671e-7■■□□□ 13.2
YBX3-218ENST00000546298 LZTS2Q9BRK4 669 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 NOC4LQ9BVI4 516 aaKnown RBP10.86□□□□□ -0.67
YBX3-218ENST00000546298 TRPV6Q9H1D0 765 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 SEMA6BQ9H3T3 888 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 IL23AQ9NPF7 189 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 COL20A1Q9P218 1284 aa10.86□□□□□ -0.67
YBX3-218ENST00000546298 DDAH1O94760 285 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 CASTP20810 708 aaKnown RBP10.85□□□□□ -0.67
YBX3-218ENST00000546298 SMARCA1P28370 1054 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 MCM5P33992 734 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 LAMC2Q13753 1193 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 NBPF20Q3BBV1 942 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 BMP2KLQ5H9B9 411 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 FAM47CQ5HY64 1035 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 NFRKBQ6P4R8 1299 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 NFXL1Q6ZNB6 911 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 STOX1Q6ZVD7 989 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 ZNF365Q70YC5 407 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 C16orf59Q7L2K0 433 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 CHST3Q7LGC8 479 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 MB21D2Q8IYB1 491 aaPredicted RBP10.85□□□□□ -0.67
YBX3-218ENST00000546298 RETREG2Q8NC44 543 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 IGDCC4Q8TDY8 1250 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 COPS5Q92905 334 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 TMEM87BQ96K49 555 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 FAM161BQ96MY7 647 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 ESYT1Q9BSJ8 1104 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 PXMP2Q9NR77 195 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 NOD1Q9Y239 953 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 FRMPD3Q5JV73 1810 aa10.85□□□□□ -0.67
YBX3-218ENST00000546298 CCDC69A6NI79 296 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 PRC1O43663 620 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 PPP1R11O60927 126 aaPredicted RBP10.84□□□□□ -0.67
YBX3-218ENST00000546298 ARIH2O95376 493 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 PFKMP08237 780 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 CALM1P0DP23 149 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 CALM2P0DP24 149 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 CALM3P0DP25 149 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 ACRP10323 421 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 MYCLP12524 364 aaPredicted RBP10.84□□□□□ -0.67
YBX3-218ENST00000546298 CCL23P55773 120 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 ANTXR2P58335 489 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 DGKDQ16760 1214 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 RNF20Q5VTR2 975 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 AFG1LQ8WV93 481 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 HERVK_113Q902F9 699 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 RRP36Q96EU6 259 aaKnown RBP10.84□□□□□ -0.67
YBX3-218ENST00000546298 GUCD1Q96NT3 240 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 CDX2Q99626 313 aaPredicted RBP10.84□□□□□ -0.67
YBX3-218ENST00000546298 PDCD2LQ9BRP1 358 aa10.84□□□□□ -0.67
YBX3-218ENST00000546298 LSG1Q9H089 658 aaKnown RBP10.84□□□□□ -0.67
YBX3-218ENST00000546298 ANO2Q9NQ90 1003 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms