RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ZNF396Q96N95 335 aaPredicted RBP9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 MTA3Q9BTC8 594 aa9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 RTEL1Q9NZ71 1219 aa9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 PITPNM2Q9BZ72 1349 aa9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 PNMA6FA0A0J9YX94 578 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 CHMP4BP1P59074 171 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 PPP2R5BQ15173 497 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 SLC30A10Q6XR72 485 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 MICALL1Q8N3F8 863 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 CBX8Q9HC52 389 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 MYH4Q9Y623 1939 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 SPDYE3A6NKU9 549 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 CCNT1O60563 726 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 PPP1R11O60927 126 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 CDC25AP30304 524 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 MMP14P50281 582 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 FUT2Q10981 343 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 RESTQ13127 1097 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 CCDC144BQ3MJ40 725 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 MYSM1Q5VVJ2 828 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 CYP4F22Q6NT55 531 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 NOSTRINQ8IVI9 506 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 PRPF38AQ8NAV1 312 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 FAM200AQ8TCP9 573 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 CCDC12Q8WUD4 166 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 HINFPQ9BQA5 517 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 LZTS2Q9BRK4 669 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 PAXBP1Q9Y5B6 917 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 PCDHB6Q9Y5E3 794 aa9.77□□□□□ -0.85
LIMCH1-209ENST00000509277 LAMB1P07942 1786 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 GOLGA8FQ08AF8 430 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 GOLGA8DPQ0D2H9 430 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 UVSSAQ2YD98 709 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 CLIC6Q96NY7 704 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 DICER1Q9UPY3 1922 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 DDX39AO00148 427 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 STXBP3O00186 592 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 GNA11P29992 359 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 CLCN6P51797 869 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 CST9Q5W186 159 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 TEX2Q8IWB9 1127 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 ANKS1AQ92625 1134 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 SHISA4Q96DD7 197 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 GDAP1L1Q96MZ0 367 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 P2RX7Q99572 595 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 KIAA1683Q9H0B3 1180 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 BARHL2Q9NY43 387 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 ZC3H4Q9UPT8 1303 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 NFIBO00712 420 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 WDR46O15213 610 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 TPM3P06753 285 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 EIF2AK2P19525 551 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 MRPL12P52815 198 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 TTC31Q49AM3 519 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 FBXL16Q8N461 479 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 ANKRD13CQ8N6S4 541 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 SDF4Q9BRK5 362 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 CARD6Q9BX69 1037 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 SPZ1Q9BXG8 430 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 FEM1BQ9UK73 627 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 SMCHD1A6NHR9 2005 aa9.76□□□□□ -0.85
LIMCH1-209ENST00000509277 TCHHQ07283 1943 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 VWA3AA6NCI4 1184 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 H0YHG0 523 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 COG2Q14746 738 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 FKBP15Q5T1M5 1219 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 TMC6Q7Z403 805 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 ANKRD35Q8N283 1001 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 TBCKQ8TEA7 893 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 MKL1Q969V6 931 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 ZSCAN16Q9H4T2 348 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 CFAP45Q9UL16 551 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 MYCP01106 439 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 METTL16Q86W50 562 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 GMCL1P1Q8NEA9 526 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 GMCL1Q96IK5 515 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 RNF146Q9NTX7 359 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 SPTLC3Q9NUV7 552 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 PCDHA4Q9UN74 947 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 AFG3L2Q9Y4W6 797 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 PSME4Q14997 1843 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 SSC5DA1L4H1 1573 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 A0A1B0GVL5 298 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 GJA5P36382 358 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 SNAPC2Q13487 334 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 ZNF784Q8NCA9 323 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 TSPYL1Q9H0U9 437 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 RIPK3Q9Y572 518 aa9.75□□□□□ -0.85
LIMCH1-209ENST00000509277 WNT7AO00755 349 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 CHMP2AO43633 222 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 TXKP42681 527 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 MUM1L1Q5H9M0 696 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 TTC38Q5R3I4 469 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 ANO1Q5XXA6 986 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 LPAR1Q92633 364 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 RIOX1Q9H6W3 641 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 CPA4Q9UI42 421 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 MORC2Q9Y6X9 1032 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 FRMD3A2A2Y4 597 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 NONOQ15233 471 aaKnown RBP eCLIP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms