RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PXMP2Q9NR77 195 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 V9GY48 417 aaPredicted RBP18.32■□□□□ 0.52
UPF3A-208ENST00000484246 TNRC18O15417 2968 aaPredicted RBP18.31■□□□□ 0.52
UPF3A-208ENST00000484246 PRPF3O43395 683 aaKnown RBP18.31■□□□□ 0.52
UPF3A-208ENST00000484246 ADAMTS4O75173 837 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 CST5P28325 142 aaPredicted RBP18.31■□□□□ 0.52
UPF3A-208ENST00000484246 AK2P54819 239 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 PDE4DQ08499 809 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 HEATR3Q7Z4Q2 680 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 FBXO16Q8IX29 292 aaPredicted RBP18.31■□□□□ 0.52
UPF3A-208ENST00000484246 ARRDC4Q8NCT1 418 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 PDCD2LQ9BRP1 358 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 C22orf23Q9BZE7 217 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 UPF3AQ9H1J1 476 aaKnown RBP18.31■□□□□ 0.52
UPF3A-208ENST00000484246 BARHL2Q9NY43 387 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 SMCHD1A6NHR9 2005 aa18.31■□□□□ 0.52
UPF3A-208ENST00000484246 hCG_1642624A0A1W2PR95 340 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 ESYT2A0FGR8 921 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 STXBP3O00186 592 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 MEIS2O14770 477 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 ADCY6O43306 1168 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 PFKFB2O60825 505 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 SCG2P13521 617 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 IQSEC1Q6DN90 963 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 TYW1BQ6NUM6 668 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 NECAB2Q7Z6G3 386 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 XPNPEP3Q9NQH7 507 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 TPCN1Q9ULQ1 816 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 GNEQ9Y223 722 aaKnown RBP18.3■□□□□ 0.52
UPF3A-208ENST00000484246 Q9Y3F1 56 aa18.3■□□□□ 0.52
UPF3A-208ENST00000484246 DDX49Q9Y6V7 483 aaKnown RBP18.3■□□□□ 0.52
UPF3A-208ENST00000484246 SYNRGQ9UMZ2 1314 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 HOXA13P31271 388 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-208ENST00000484246 NEK4P51957 841 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 CCT2P78371 535 aaKnown RBP18.29■□□□□ 0.52
UPF3A-208ENST00000484246 LRRC41Q15345 812 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 PKN1Q16512 942 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 ARHGEF16Q5VV41 709 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 FAM177A1Q8N128 213 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-208ENST00000484246 KLHDC9Q8NEP7 349 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 DIS3LQ8TF46 1054 aaKnown RBP18.29■□□□□ 0.52
UPF3A-208ENST00000484246 GPKOWQ92917 476 aaPredicted RBP eCLIP18.29■□□□□ 0.52
UPF3A-208ENST00000484246 CUL5Q93034 780 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 GLT8D2Q9H1C3 349 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 PSTPIP2Q9H939 334 aa18.29■□□□□ 0.52
UPF3A-208ENST00000484246 UPF2Q9HAU5 1272 aaKnown RBP18.29■□□□□ 0.52
UPF3A-208ENST00000484246 NCOA5Q9HCD5 579 aaKnown RBP18.29■□□□□ 0.52
UPF3A-208ENST00000484246 FRMPD3Q5JV73 1810 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 NR3C2P08235 984 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 EIF2AK2P19525 551 aaKnown RBP18.28■□□□□ 0.52
UPF3A-208ENST00000484246 ADCYAP1R1P41586 468 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 GJA9P57773 515 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 TNFAIP2Q03169 654 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 STXBP2Q15833 593 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 ANO1Q5XXA6 986 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 CPLX2Q6PUV4 134 aaKnown RBP18.28■□□□□ 0.52
UPF3A-208ENST00000484246 RNF180Q86T96 592 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 SCFD2Q8WU76 684 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 LENG1Q96BZ8 264 aaPredicted RBP18.28■□□□□ 0.52
UPF3A-208ENST00000484246 PAWRQ96IZ0 340 aaKnown RBP18.28■□□□□ 0.52
UPF3A-208ENST00000484246 C11orf49Q9H6J7 331 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 RIC8AQ9NPQ8 531 aa18.28■□□□□ 0.52
UPF3A-208ENST00000484246 STK36Q9NRP7 1315 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.27■□□□□ 0.52
UPF3A-208ENST00000484246 NKRFO15226 690 aaKnown RBP eCLIP18.27■□□□□ 0.52
UPF3A-208ENST00000484246 EIF3JO75822 258 aaKnown RBP18.27■□□□□ 0.52
UPF3A-208ENST00000484246 STAM2O75886 525 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 CDKL5O76039 1030 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 SMPD1P17405 629 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 NAPAP54920 295 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 SCRN1Q12765 414 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 PGM5Q15124 567 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 DUSP28Q4G0W2 176 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 CCSAPQ6IQ19 270 aaPredicted RBP18.27■□□□□ 0.52
UPF3A-208ENST00000484246 XRRA1Q6P2D8 792 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 EEPD1Q7L9B9 569 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 VSIG10LQ86VR7 867 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 SMARCC2Q8TAQ2 1214 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 PHKBQ93100 1093 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 TSEN34Q9BSV6 310 aaKnown RBP18.27■□□□□ 0.52
UPF3A-208ENST00000484246 SLKQ9H2G2 1235 aaPredicted RBP18.27■□□□□ 0.52
UPF3A-208ENST00000484246 PDGFCQ9NRA1 345 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 PHF24Q9UPV7 400 aa18.27■□□□□ 0.52
UPF3A-208ENST00000484246 KBTBD13C9JR72 458 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 CPLX1O14810 134 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 CTAGE5O15320 804 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 PGK1P00558 417 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 AKAP17AQ02040 695 aaKnown RBP18.26■□□□□ 0.51
UPF3A-208ENST00000484246 CCDC62Q6P9F0 684 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 USP17L6PQ6QN14 398 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 FCHSD1Q86WN1 690 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 TRIM22Q8IYM9 498 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 IL31RAQ8NI17 732 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 CCDC12Q8WUD4 166 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-208ENST00000484246 TBC1D32Q96NH3 1257 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 LARP6Q9BRS8 491 aaKnown RBP18.26■□□□□ 0.51
UPF3A-208ENST00000484246 HTATIP2Q9BUP3 242 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 ZMYND12Q9H0C1 365 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 SPC25Q9HBM1 224 aa18.26■□□□□ 0.51
UPF3A-208ENST00000484246 MOXD2PA6NHM9 499 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms