RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 ARID5AQ03989 594 aa19.91■□□□□ 0.78
MCF2L-221ENST00000469415 KRT79Q5XKE5 535 aa19.91■□□□□ 0.78
MCF2L-221ENST00000469415 NOA1Q8NC60 698 aaKnown RBP19.91■□□□□ 0.78
MCF2L-221ENST00000469415 LARP4BQ92615 738 aaKnown RBP19.91■□□□□ 0.78
MCF2L-221ENST00000469415 PNKPQ96T60 521 aa19.91■□□□□ 0.78
MCF2L-221ENST00000469415 NAPGQ99747 312 aaPredicted RBP19.91■□□□□ 0.78
MCF2L-221ENST00000469415 CDC23Q9UJX2 597 aa19.91■□□□□ 0.78
MCF2L-221ENST00000469415 MMP10P09238 476 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 CCNE1P24864 410 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 TMEM266Q2M3C6 531 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 CC2D1AQ6P1N0 951 aaPredicted RBP19.9■□□□□ 0.78
MCF2L-221ENST00000469415 DDX12PQ92771 950 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 ARFGAP3Q9NP61 516 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 ROBO3Q96MS0 1386 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 MEIS1O00470 390 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 EDIL3O43854 480 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 CT47A1Q5JQC4 288 aaPredicted RBP19.9■□□□□ 0.78
MCF2L-221ENST00000469415 PSTPIP2Q9H939 334 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 NLRC4Q9NPP4 1024 aa19.9■□□□□ 0.78
MCF2L-221ENST00000469415 DDX25Q9UHL0 483 aaKnown RBP19.9■□□□□ 0.78
MCF2L-221ENST00000469415 SHMT1P34896 483 aa19.89■□□□□ 0.78
MCF2L-221ENST00000469415 FKBP15Q5T1M5 1219 aa19.89■□□□□ 0.78
MCF2L-221ENST00000469415 FGFBP2Q9BYJ0 223 aa19.89■□□□□ 0.78
MCF2L-221ENST00000469415 TMX4Q9H1E5 349 aaPredicted RBP19.89■□□□□ 0.78
MCF2L-221ENST00000469415 SCAF8Q9UPN6 1271 aaKnown RBP19.89■□□□□ 0.78
MCF2L-221ENST00000469415 RREB1Q92766 1687 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 DDTLA6NHG4 134 aaPredicted RBP19.89■□□□□ 0.77
MCF2L-221ENST00000469415 PHACTR2O75167 634 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 SLC1A4P43007 532 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 SRGAP1Q7Z6B7 1085 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 C2CD5Q86YS7 1000 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 CERKQ8TCT0 537 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 TRIM34Q9BYJ4 488 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 PLEKHA4Q9H4M7 779 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 RIOX1Q9H6W3 641 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 ZNHIT6Q9NWK9 470 aaKnown RBP19.89■□□□□ 0.77
MCF2L-221ENST00000469415 ZNF185O15231 689 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 AMPD3Q01432 767 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 ZNF543Q08ER8 600 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 KCNB1Q14721 858 aa19.89■□□□□ 0.77
MCF2L-221ENST00000469415 ATP1A1P05023 1023 aaKnown RBP19.88■□□□□ 0.77
MCF2L-221ENST00000469415 EEF1GP26641 437 aaKnown RBP19.88■□□□□ 0.77
MCF2L-221ENST00000469415 MATR3P43243 847 aaKnown RBP eCLIP19.88■□□□□ 0.77
MCF2L-221ENST00000469415 SEPT2Q15019 361 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 TRMT1LQ7Z2T5 733 aaKnown RBP19.88■□□□□ 0.77
MCF2L-221ENST00000469415 GPR161Q8N6U8 529 aaKnown RBP19.88■□□□□ 0.77
MCF2L-221ENST00000469415 ZNF507Q8TCN5 953 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 KIAA1024Q9UPX6 916 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 PCDHA1Q9Y5I3 950 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 CCDC88AQ3V6T2 1871 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 GAKO14976 1311 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 RASSF10A6NK89 507 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 IPO7O95373 1038 aaKnown RBP19.88■□□□□ 0.77
MCF2L-221ENST00000469415 TBC1D8O95759 1140 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 DNM2P50570 870 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 HERVK_113P62684 666 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 TERF2Q15554 542 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 KCTD19Q17RG1 926 aaPredicted RBP19.88■□□□□ 0.77
MCF2L-221ENST00000469415 RSRC2Q7L4I2 434 aaKnown RBP19.88■□□□□ 0.77
MCF2L-221ENST00000469415 TEKT1Q969V4 418 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 PCDHA12Q9UN75 941 aa19.88■□□□□ 0.77
MCF2L-221ENST00000469415 ITIH6Q6UXX5 1313 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 LAD1O00515 517 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 KRT18P05783 430 aaKnown RBP19.87■□□□□ 0.77
MCF2L-221ENST00000469415 HLA-DOAP06340 250 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 EEF2P13639 858 aaKnown RBP19.87■□□□□ 0.77
MCF2L-221ENST00000469415 PRPHP41219 470 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 COL23A1Q86Y22 540 aaPredicted RBP19.87■□□□□ 0.77
MCF2L-221ENST00000469415 CCDC51Q96ER9 411 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 DEF6Q9H4E7 631 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 THAP9Q9H5L6 903 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 NHEJ1Q9H9Q4 299 aaPredicted RBP19.87■□□□□ 0.77
MCF2L-221ENST00000469415 KIAA1551Q9HCM1 1747 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 POTEB3A0JP26 581 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 POTECB2RU33 542 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 HOXA13P31271 388 aaPredicted RBP19.87■□□□□ 0.77
MCF2L-221ENST00000469415 APOBEC3HQ6NTF7 200 aaKnown RBP19.87■□□□□ 0.77
MCF2L-221ENST00000469415 POTEBQ6S5H4 581 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 DHTKD1Q96HY7 919 aaPredicted RBP19.87■□□□□ 0.77
MCF2L-221ENST00000469415 AK8Q96MA6 479 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 JADE2Q9NQC1 790 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 ATP6V0A2Q9Y487 856 aa19.87■□□□□ 0.77
MCF2L-221ENST00000469415 CTAGE15A4D2H0 777 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 TRAF5O00463 557 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 CTAGE8P0CG41 777 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 CRKP46108 304 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 CNNM4Q6P4Q7 775 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 RRAGAQ7L523 313 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 CTAGE6Q86UF2 777 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 CTAGE4Q8IX94 777 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 JAKMIP2Q96AA8 810 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 COA1Q9GZY4 146 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 TRPC5Q9UL62 973 aaPredicted RBP19.86■□□□□ 0.77
MCF2L-221ENST00000469415 CHRNA5P30532 468 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 NAP1L1P55209 391 aaKnown RBP19.86■□□□□ 0.77
MCF2L-221ENST00000469415 CYP4A11Q02928 519 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 ZYXQ15942 572 aaKnown RBP19.86■□□□□ 0.77
MCF2L-221ENST00000469415 LONRF2Q1L5Z9 754 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 QRICH1Q2TAL8 776 aa19.86■□□□□ 0.77
MCF2L-221ENST00000469415 KRT27Q7Z3Y8 459 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms