RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 PXMP2Q9NR77 195 aa13.61□□□□□ -0.23
HSPG2-206ENST00000439717 BARHL2Q9NY43 387 aa13.61□□□□□ -0.23
HSPG2-206ENST00000439717 TPCN1Q9ULQ1 816 aa13.61□□□□□ -0.23
HSPG2-206ENST00000439717 KIAA0100Q14667 2235 aaKnown RBP13.61□□□□□ -0.23
HSPG2-206ENST00000439717 RBM47A0AV96 593 aaKnown RBP13.6□□□□□ -0.23
HSPG2-206ENST00000439717 MEIS2O14770 477 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 CPLX1O14810 134 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 DUSP11O75319 330 aaKnown RBP13.6□□□□□ -0.23
HSPG2-206ENST00000439717 SCG2P13521 617 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 NAPAP54920 295 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 STXBP2Q15833 593 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 EEPD1Q7L9B9 569 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 NECAB2Q7Z6G3 386 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 FBXO16Q8IX29 292 aaPredicted RBP13.6□□□□□ -0.23
HSPG2-206ENST00000439717 TRIM22Q8IYM9 498 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 SMARCC2Q8TAQ2 1214 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 GPKOWQ92917 476 aaPredicted RBP eCLIP13.6□□□□□ -0.23
HSPG2-206ENST00000439717 KIF2CQ99661 725 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 XPNPEP3Q9NQH7 507 aa13.6□□□□□ -0.23
HSPG2-206ENST00000439717 LRRC37A2A6NM11 1700 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 STXBP3O00186 592 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 DNM1LO00429 736 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 EIF3JO75822 258 aaKnown RBP13.59□□□□□ -0.23
HSPG2-206ENST00000439717 CDKL5O76039 1030 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 NR3C2P08235 984 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 EIF2AK2P19525 551 aaKnown RBP13.59□□□□□ -0.23
HSPG2-206ENST00000439717 MNX1P50219 401 aaPredicted RBP13.59□□□□□ -0.23
HSPG2-206ENST00000439717 TNFAIP2Q03169 654 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 SSRP1Q08945 709 aaKnown RBP13.59□□□□□ -0.23
HSPG2-206ENST00000439717 SCRN1Q12765 414 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 STK3Q13188 491 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 ANO1Q5XXA6 986 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 RNF180Q86T96 592 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 FCHSD1Q86WN1 690 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 CCDC12Q8WUD4 166 aaPredicted RBP13.59□□□□□ -0.23
HSPG2-206ENST00000439717 PHKBQ93100 1093 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 PAWRQ96IZ0 340 aaKnown RBP13.59□□□□□ -0.23
HSPG2-206ENST00000439717 PDCD2LQ9BRP1 358 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 SLC26A6Q9BXS9 759 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 SPC25Q9HBM1 224 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 RIC8AQ9NPQ8 531 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 DDX49Q9Y6V7 483 aaKnown RBP13.59□□□□□ -0.23
HSPG2-206ENST00000439717 FRMPD3Q5JV73 1810 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 FRMPD4Q14CM0 1322 aa13.59□□□□□ -0.23
HSPG2-206ENST00000439717 ADCYAP1R1P41586 468 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 GJA9P57773 515 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 NKX3-2P78367 333 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 PGM5Q15124 567 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 RABEP1Q15276 862 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 PKN1Q16512 942 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 ME3Q16798 604 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 TYW1BQ6NUM6 668 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 XRRA1Q6P2D8 792 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 USP17L6PQ6QN14 398 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 VSIG10LQ86VR7 867 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 SCFD2Q8WU76 684 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 BACH2Q9BYV9 841 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 C11orf49Q9H6J7 331 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 PDGFCQ9NRA1 345 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 GNEQ9Y223 722 aaKnown RBP13.58□□□□□ -0.24
HSPG2-206ENST00000439717 Q9Y3F1 56 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 MCM3APO60318 1980 aa13.58□□□□□ -0.24
HSPG2-206ENST00000439717 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 ESYT2A0FGR8 921 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 SMCO2A6NFE2 343 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 KBTBD13C9JR72 458 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 NKRFO15226 690 aaKnown RBP eCLIP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 ADCY6O43306 1168 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 ADAMTS4O75173 837 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 STAM2O75886 525 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 DEXIO95424 95 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 COL6A1P12109 1028 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 SMPD1P17405 629 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 CST5P28325 142 aaPredicted RBP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 CCND2P30279 289 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 ADCY7P51828 1080 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 TTLL4Q14679 1199 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 LRRC41Q15345 812 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 DUSP28Q4G0W2 176 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 GJC2Q5T442 439 aaPredicted RBP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 FAM177A1Q8N128 213 aaPredicted RBP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 DIS3LQ8TF46 1054 aaKnown RBP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 GTF3C6Q969F1 213 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 LENG1Q96BZ8 264 aaPredicted RBP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 TBC1D32Q96NH3 1257 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 TSEN34Q9BSV6 310 aaKnown RBP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 HTATIP2Q9BUP3 242 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 WDR11Q9BZH6 1224 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 ZMYND12Q9H0C1 365 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 UPF3AQ9H1J1 476 aaKnown RBP13.57□□□□□ -0.24
HSPG2-206ENST00000439717 EHMT1Q9H9B1 1298 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 SH3GLB2Q9NR46 395 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 LIMCH1Q9UPQ0 1083 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 SYNRGQ9UMZ2 1314 aa13.57□□□□□ -0.24
HSPG2-206ENST00000439717 SPDYE3A6NKU9 549 aa13.56□□□□□ -0.24
HSPG2-206ENST00000439717 PGK1P00558 417 aa13.56□□□□□ -0.24
HSPG2-206ENST00000439717 FOSP01100 380 aaPredicted RBP13.56□□□□□ -0.24
HSPG2-206ENST00000439717 MYCLP12524 364 aaPredicted RBP13.56□□□□□ -0.24
HSPG2-206ENST00000439717 GNA11P29992 359 aa13.56□□□□□ -0.24
HSPG2-206ENST00000439717 UBE2SQ16763 222 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms