RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CLIC6Q96NY7 704 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 TEX13BQ9BXU2 312 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 IMPACTQ9P2X3 320 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 PARP2Q9UGN5 583 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 DDX25Q9UHL0 483 aaKnown RBP11.79□□□□□ -0.52
TCOF1-204ENST00000427724 NFE2L3Q9Y4A8 694 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 CTNND1O60716 968 aaKnown RBP11.79□□□□□ -0.52
TCOF1-204ENST00000427724 IVLP07476 585 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 ERCC3P19447 782 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 HNRNPH2P55795 449 aaKnown RBP11.79□□□□□ -0.52
TCOF1-204ENST00000427724 TTLL4Q14679 1199 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 SPA17Q15506 151 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 MTERF2Q49AM1 385 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 DCAF17Q5H9S7 520 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-204ENST00000427724 NSUN6Q8TEA1 469 aaKnown RBP11.79□□□□□ -0.52
TCOF1-204ENST00000427724 PSMD1Q99460 953 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 GBP3Q9H0R5 595 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 KCNF1Q9H3M0 494 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 FLT1P17948 1338 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 CCDC175P0C221 793 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 CCDC144BQ3MJ40 725 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 GNASQ5JWF2 1037 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 MCTP2Q6DN12 878 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 CTR9Q6PD62 1173 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 MOB2Q70IA6 237 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 DGKHQ86XP1 1220 aa11.79□□□□□ -0.52
TCOF1-204ENST00000427724 SRRTQ9BXP5 876 aaKnown RBP11.79□□□□□ -0.52
TCOF1-204ENST00000427724 DDX41Q9UJV9 622 aaKnown RBP11.79□□□□□ -0.52
TCOF1-204ENST00000427724 TMEM88BA6NKF7 163 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 APOA5Q6Q788 366 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 SCYL3Q8IZE3 742 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 NLRP7Q8WX94 980 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 MANSC4A6NHS7 340 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-204ENST00000427724 BTBD18B2RXH4 712 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 USO1O60763 962 aaKnown RBP11.78□□□□□ -0.52
TCOF1-204ENST00000427724 CYP4F22Q6NT55 531 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 RNF208Q9H0X6 261 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 PXDNQ92626 1479 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 GOLGA8FQ08AF8 430 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 GOLGA8DPQ0D2H9 430 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 FBXO38Q6PIJ6 1188 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 CEP170P1Q96L14 293 aa11.78□□□□□ -0.52
TCOF1-204ENST00000427724 ZBTB24O43167 697 aaPredicted RBP11.77□□□□□ -0.52
TCOF1-204ENST00000427724 HOXA10P31260 410 aaPredicted RBP11.77□□□□□ -0.52
TCOF1-204ENST00000427724 SLC8A3P57103 927 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 RGS22Q8NE09 1264 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 AIFM3Q96NN9 605 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 SHTN1A0MZ66 631 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 YARSP54577 528 aaKnown RBP11.77□□□□□ -0.52
TCOF1-204ENST00000427724 ARID5AQ03989 594 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 RGMBQ6NW40 437 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 PROM2Q8N271 834 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 EXOC7Q9UPT5 735 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 FRMD4BQ9Y2L6 1034 aa11.77□□□□□ -0.52
TCOF1-204ENST00000427724 TLR3O15455 904 aaKnown RBP11.77□□□□□ -0.53
TCOF1-204ENST00000427724 GCNT3O95395 438 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 ADKP55263 362 aaKnown RBP11.77□□□□□ -0.53
TCOF1-204ENST00000427724 HDLBPQ00341 1268 aaKnown RBP11.77□□□□□ -0.53
TCOF1-204ENST00000427724 ZNF569Q5MCW4 686 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 USP17L6PQ6QN14 398 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 SPTLC3Q9NUV7 552 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 CUTAO60888 179 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 TUBB4AP04350 444 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 TXNP10599 105 aaKnown RBP11.77□□□□□ -0.53
TCOF1-204ENST00000427724 RARBP10826 455 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 RPL13P26373 211 aaKnown RBP11.77□□□□□ -0.53
TCOF1-204ENST00000427724 ARPP19P56211 112 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 NELFCDQ8IXH7 590 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 LINC00301Q8NCQ3 95 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 NLRP4Q96MN2 994 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 GOLPH3LQ9H4A5 285 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 MRPL44Q9H9J2 332 aaKnown RBP11.77□□□□□ -0.53
TCOF1-204ENST00000427724 FANCLQ9NW38 375 aa11.77□□□□□ -0.53
TCOF1-204ENST00000427724 ASB14A6NK59 587 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 NDUFB10O96000 172 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 CTNNA2P26232 953 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 IFRD2Q12894 506 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-204ENST00000427724 MIS18BP1Q6P0N0 1132 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 FAM114A1Q8IWE2 563 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 DCAF4Q8WV16 495 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 ATG4CQ96DT6 458 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 ZNF668Q96K58 619 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-204ENST00000427724 GLT1D1Q96MS3 346 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 POLIQ9UNA4 740 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 INPP5FQ9Y2H2 1132 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 EXOC3O60645 756 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 RHOXF2BP0C7M4 288 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 TNNI1P19237 187 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 CMA1P23946 247 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 C12orf60Q5U649 245 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 CABP7Q86V35 215 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 PROCA1Q8NCQ7 364 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-204ENST00000427724 RHOXF2Q9BQY4 288 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 ST7Q9NRC1 585 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.76□□□□□ -0.535e-7■■■□□ 16.5
TCOF1-204ENST00000427724 PNMA6FA0A0J9YX94 578 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 GSG1L2A8MUP6 293 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 SRGAP2CP0DJJ0 459 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 GNAT1P11488 350 aa11.76□□□□□ -0.53
TCOF1-204ENST00000427724 PSMC4P43686 418 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms