RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 CYTH3O43739 400 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 DDAH1O94760 285 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 CFBP00751 764 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 HSD17B4P51659 736 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 PPP2R5BQ15173 497 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 GPR153Q6NV75 609 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 HOMER1Q86YM7 354 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 SLC43A3Q8NBI5 491 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 PIGSQ96S52 555 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 SEZ6LQ9BYH1 1024 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 GPHNQ9NQX3 736 aaPredicted RBP22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 TBX21Q9UL17 535 aa22.77■■□□□ 1.24
TSPAN4-209ENST00000409543 PNMA6FA0A0J9YX94 578 aa22.76■■□□□ 1.23
TSPAN4-209ENST00000409543 CDC45O75419 566 aa22.76■■□□□ 1.23
TSPAN4-209ENST00000409543 RNF20Q5VTR2 975 aa22.76■■□□□ 1.23
TSPAN4-209ENST00000409543 FAM126BQ8IXS8 530 aa22.76■■□□□ 1.23
TSPAN4-209ENST00000409543 ZNF654Q8IZM8 581 aa22.76■■□□□ 1.23
TSPAN4-209ENST00000409543 BAZ2BQ9UIF8 2168 aaKnown RBP22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 SH2B2O14492 632 aaPredicted RBP22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 TLR3O15455 904 aaKnown RBP22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 TXNP10599 105 aaKnown RBP22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 KIF5BP33176 963 aa22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 CPT1AP50416 773 aa22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 ITGA7Q13683 1181 aa22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 STXBP2Q15833 593 aa22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 ARHGEF16Q5VV41 709 aa22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 OR6J1Q8NGC5 347 aa22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 CTCFLQ8NI51 663 aaPredicted RBP22.75■■□□□ 1.23
TSPAN4-209ENST00000409543 TIMP1P01033 207 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 SMARCA1P28370 1054 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 LIFRP42702 1097 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 COL9A3Q14050 684 aaPredicted RBP22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 TTLL4Q14679 1199 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 SHHQ15465 462 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 NFXL1Q6ZNB6 911 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 PXMP2Q9NR77 195 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 POLR3EQ9NVU0 708 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 GRIN2DO15399 1336 aa22.74■■□□□ 1.23
TSPAN4-209ENST00000409543 CCDC69A6NI79 296 aa22.73■■□□□ 1.23
TSPAN4-209ENST00000409543 CD4P01730 458 aa22.73■■□□□ 1.23
TSPAN4-209ENST00000409543 EIF2AK2P19525 551 aaKnown RBP22.73■■□□□ 1.23
TSPAN4-209ENST00000409543 BRDTQ58F21 947 aaPredicted RBP22.73■■□□□ 1.23
TSPAN4-209ENST00000409543 CCDC62Q6P9F0 684 aa22.73■■□□□ 1.23
TSPAN4-209ENST00000409543 LZTS2Q9BRK4 669 aa22.73■■□□□ 1.23
TSPAN4-209ENST00000409543 MYL10Q9BUA6 226 aa22.73■■□□□ 1.23
TSPAN4-209ENST00000409543 SPZ1Q9BXG8 430 aa22.73■■□□□ 1.23
TSPAN4-209ENST00000409543 A6NJR5 290 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 KPNA6O60684 536 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 EIF3JO75822 258 aaKnown RBP22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 ARIH2O95376 493 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 NR3C2P08235 984 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 CALM1P0DP23 149 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 CALM2P0DP24 149 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 CALM3P0DP25 149 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 GNAQP50148 359 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 PURAQ00577 322 aaKnown RBP22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 FPGSQ05932 587 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 C9orf50Q5SZB4 431 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 SEPT14Q6ZU15 432 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 COPS5Q92905 334 aa22.72■■□□□ 1.23
TSPAN4-209ENST00000409543 GCOM1H8Y6P7 765 aaPredicted RBP22.71■■□□□ 1.23
TSPAN4-209ENST00000409543 POLR2MP0CAP2 368 aa22.71■■□□□ 1.23
TSPAN4-209ENST00000409543 PSMC6P62333 389 aa22.71■■□□□ 1.23
TSPAN4-209ENST00000409543 TSGA10IPQ3SY00 556 aa22.71■■□□□ 1.23
TSPAN4-209ENST00000409543 MYL3P08590 195 aa22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 HOXA13P31271 388 aaPredicted RBP22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 EPHB4P54760 987 aa22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 MFSD5Q6N075 450 aa22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 RRP36Q96EU6 259 aaKnown RBP22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 NEK1Q96PY6 1258 aa22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 PDCD2LQ9BRP1 358 aa22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 MTG1Q9BT17 334 aaPredicted RBP22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 SLC12A7Q9Y666 1083 aa22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 KIAA1217Q5T5P2 1943 aa22.7■■□□□ 1.22
TSPAN4-209ENST00000409543 LY6KQ17RY6 165 aa22.69■■□□□ 1.22
TSPAN4-209ENST00000409543 SGMS1Q86VZ5 419 aa22.69■■□□□ 1.22
TSPAN4-209ENST00000409543 PIBF1Q8WXW3 757 aa22.69■■□□□ 1.22
TSPAN4-209ENST00000409543 LRRC2Q9BYS8 371 aa22.69■■□□□ 1.22
TSPAN4-209ENST00000409543 GH1P01241 217 aa22.68■■□□□ 1.22
TSPAN4-209ENST00000409543 NEFLP07196 543 aa22.68■■□□□ 1.22
TSPAN4-209ENST00000409543 VSIG10LQ86VR7 867 aa22.68■■□□□ 1.22
TSPAN4-209ENST00000409543 RASEFQ8IZ41 740 aa22.68■■□□□ 1.22
TSPAN4-209ENST00000409543 SRBD1Q8N5C6 995 aaKnown RBP22.68■■□□□ 1.22
TSPAN4-209ENST00000409543 TRPV6Q9H1D0 765 aa22.68■■□□□ 1.22
TSPAN4-209ENST00000409543 SEC63Q9UGP8 760 aaKnown RBP22.68■■□□□ 1.22
TSPAN4-209ENST00000409543 DDX41Q9UJV9 622 aaKnown RBP22.68■■□□□ 1.22
TSPAN4-209ENST00000409543 B4GALT4O60513 344 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 PLEKHA8P1O95397 391 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 MYCLP12524 364 aaPredicted RBP22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 RXRAP19793 462 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 EXOSC10Q01780 885 aaKnown RBP22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 ARHGAP1Q07960 439 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 KRT32Q14532 448 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 PGM5Q15124 567 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 DHX32Q7L7V1 743 aaKnown RBP22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 FCHSD1Q86WN1 690 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 TMEM199Q8N511 208 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 DEFB123Q8N688 67 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 FANCBQ8NB91 859 aa22.67■■□□□ 1.22
TSPAN4-209ENST00000409543 PPP1R12CQ9BZL4 782 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms