RNA–Protein interactions for RNA: ENST00000375703.7

MSH5-201, Transcript of mutS homolog 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSH5, Length 2,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-201ENST00000375703 BLOC1S4Q9NUP1 217 aa16.2■□□□□ 0.18
MSH5-201ENST00000375703 PLAGL2Q9UPG8 496 aa16.2■□□□□ 0.18
MSH5-201ENST00000375703 ZNF831Q5JPB2 1677 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 PVALEFA0A1B0GWK0 134 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 TARSL2A2RTX5 802 aaKnown RBP16.19■□□□□ 0.18
MSH5-201ENST00000375703 USO1O60763 962 aaKnown RBP16.19■□□□□ 0.18
MSH5-201ENST00000375703 PLEKP08567 350 aaPredicted RBP16.19■□□□□ 0.18
MSH5-201ENST00000375703 ACTN2P35609 894 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 TNNT3P45378 269 aaPredicted RBP16.19■□□□□ 0.18
MSH5-201ENST00000375703 CCDC96Q2M329 555 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 UNC13DQ70J99 1090 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 KRT26Q7Z3Y9 468 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 VIPAS39Q9H9C1 493 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 MED4Q9NPJ6 270 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 CCNL1Q9UK58 526 aaPredicted RBP16.19■□□□□ 0.18
MSH5-201ENST00000375703 ESYT2A0FGR8 921 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 ZNF263O14978 683 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 PLCG2P16885 1265 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 CAPN2P17655 700 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 RFC4P35249 363 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 C2CD5Q86YS7 1000 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 TRERF1Q96PN7 1200 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 RIOX1Q9H6W3 641 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 STK17AQ9UEE5 414 aa16.19■□□□□ 0.18
MSH5-201ENST00000375703 SNED1Q8TER0 1413 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 FGFR1OPO95684 399 aaKnown RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 HNRNPH3P31942 346 aaKnown RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 TMEM266Q2M3C6 531 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 C15orf52Q6ZUT6 534 aaKnown RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 LARP4BQ92615 738 aaKnown RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 COA7Q96BR5 231 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 PNMA5Q96PV4 448 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 MMRN2Q9H8L6 949 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 FAM207AQ9NSI2 230 aaPredicted RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 CWC15Q9P013 229 aaKnown RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 PCDHA13Q9Y5I0 950 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 PDE2AO00408 941 aaPredicted RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 FXR2P51116 673 aaKnown RBP eCLIP16.18■□□□□ 0.18
MSH5-201ENST00000375703 GPSM2P81274 684 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 LEKR1Q6ZMV7 388 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 IFIH1Q9BYX4 1025 aaKnown RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 ARHGAP20Q9P2F6 1191 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 SIK3Q9Y2K2 1263 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 FRMPD2Q68DX3 1309 aaPredicted RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 TULP2O00295 520 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 TACC1O75410 805 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 ZMYND10O75800 440 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 CCDC84Q86UT8 332 aaPredicted RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 GUF1Q8N442 669 aaKnown RBP16.18■□□□□ 0.18
MSH5-201ENST00000375703 TRIM58Q8NG06 486 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 DEF6Q9H4E7 631 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 JRKLQ9Y4A0 524 aa16.18■□□□□ 0.18
MSH5-201ENST00000375703 PDIA5Q14554 519 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 MAN2A1Q16706 1144 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 IQCEQ6IPM2 695 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 SMCR8Q8TEV9 937 aaPredicted RBP16.17■□□□□ 0.18
MSH5-201ENST00000375703 RAB34Q9BZG1 259 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 EPHB6O15197 1021 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 SLC37A4O43826 429 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 UFL1O94874 794 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 PDHBP11177 359 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 EIF4A3P38919 411 aaKnown RBP16.17■□□□□ 0.18
MSH5-201ENST00000375703 ADCY7P51828 1080 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 RHBDL3P58872 404 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 RAD51AP2Q09MP3 1159 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 TRAPPC3LQ5T215 181 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 CNBD1Q8NA66 436 aa16.17■□□□□ 0.18
MSH5-201ENST00000375703 hCG_1984214I3L0E3 225 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 TDP2O95551 362 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 NOVP48745 357 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 KIF11P52732 1056 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 IRX5P78411 483 aaPredicted RBP16.16■□□□□ 0.18
MSH5-201ENST00000375703 KRT79Q5XKE5 535 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 CCNI2Q6ZMN8 369 aaPredicted RBP16.16■□□□□ 0.18
MSH5-201ENST00000375703 RRAGAQ7L523 313 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 ZNF713Q8N859 430 aaPredicted RBP16.16■□□□□ 0.18
MSH5-201ENST00000375703 RAD54LQ92698 747 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 SNX12Q9UMY4 172 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 POTEMA6NI47 508 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 AKR1B10O60218 316 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 AARSP49588 968 aaKnown RBP eCLIP16.16■□□□□ 0.182e-6■■■■■ 67
MSH5-201ENST00000375703 LRRC63Q05C16 580 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 C2orf54Q08AI8 447 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 MFSD14BQ5SR56 506 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 CCDC70Q6NSX1 233 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 SLF2Q8IX21 1173 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 FNBP4Q8N3X1 1017 aaPredicted RBP16.16■□□□□ 0.18
MSH5-201ENST00000375703 SNX29Q8TEQ0 813 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 COG1Q8WTW3 980 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 DDX12PQ92771 950 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 RPGRQ92834 1020 aaKnown RBP16.16■□□□□ 0.18
MSH5-201ENST00000375703 SH2D4AQ9H788 454 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 HPCAL4Q9UM19 191 aa16.16■□□□□ 0.18
MSH5-201ENST00000375703 COL24A1Q17RW2 1714 aa16.15■□□□□ 0.18
MSH5-201ENST00000375703 EDIL3O43854 480 aa16.15■□□□□ 0.18
MSH5-201ENST00000375703 SYF2O95926 243 aaKnown RBP16.15■□□□□ 0.18
MSH5-201ENST00000375703 IL1R1P14778 569 aa16.15■□□□□ 0.18
MSH5-201ENST00000375703 ATP2B4P23634 1241 aa16.15■□□□□ 0.18
MSH5-201ENST00000375703 FAM163AQ96GL9 167 aaPredicted RBP16.15■□□□□ 0.18
MSH5-201ENST00000375703 GDAP1L1Q96MZ0 367 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms