RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 FBXO16Q8IX29 292 aaPredicted RBP22.28■■□□□ 1.16
CCDC28A-203ENST00000617445 ABCB11O95342 1321 aa22.28■■□□□ 1.16
CCDC28A-203ENST00000617445 MYH6P13533 1939 aa22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 LRRC37A2A6NM11 1700 aa22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 DYNC1LI2O43237 492 aaPredicted RBP22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 CALML3P27482 149 aa22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 CDC37Q16543 378 aaPredicted RBP22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 KIAA1211Q6ZU35 1233 aa22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 EEPD1Q7L9B9 569 aa22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 ADGRF4Q8IZF3 695 aa22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 PDGFCQ9NRA1 345 aa22.27■■□□□ 1.16
CCDC28A-203ENST00000617445 RBM47A0AV96 593 aaKnown RBP22.26■■□□□ 1.15
CCDC28A-203ENST00000617445 SGSM2O43147 1006 aa22.26■■□□□ 1.15
CCDC28A-203ENST00000617445 SEC23AQ15436 765 aa22.26■■□□□ 1.15
CCDC28A-203ENST00000617445 DUSP28Q4G0W2 176 aa22.26■■□□□ 1.15
CCDC28A-203ENST00000617445 SLC30A10Q6XR72 485 aa22.26■■□□□ 1.15
CCDC28A-203ENST00000617445 MCF2L2Q86YR7 1114 aa22.26■■□□□ 1.15
CCDC28A-203ENST00000617445 PURBQ96QR8 312 aaKnown RBP22.26■■□□□ 1.15
CCDC28A-203ENST00000617445 TLR3O15455 904 aaKnown RBP22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 CYP21A2P08686 494 aa22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 IRX5P78411 483 aaPredicted RBP22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 BEX3Q00994 111 aa22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 PTH1RQ03431 593 aa22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 PDE4DQ08499 809 aa22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 USH1GQ495M9 461 aa22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 FAM109BQ6ICB4 259 aaPredicted RBP22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 DEFB123Q8N688 67 aa22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 WDR11Q9BZH6 1224 aa22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 MRPL11Q9Y3B7 192 aaKnown RBP22.25■■□□□ 1.15
CCDC28A-203ENST00000617445 ERICH2A1L162 156 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 NKRFO15226 690 aaKnown RBP eCLIP22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 DHX16O60231 1041 aaKnown RBP22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 TIMP1P01033 207 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 EDNRBP24530 442 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 SART3Q15020 963 aaKnown RBP22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 SHHQ15465 462 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 FBXO11Q86XK2 927 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 SLC43A3Q8NBI5 491 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 NCOA7Q8NI08 942 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 CPVLQ9H3G5 476 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 TBX21Q9UL17 535 aa22.24■■□□□ 1.15
CCDC28A-203ENST00000617445 ITGB8P26012 769 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 FPGSQ05932 587 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 TRAF1Q13077 416 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 QRICH1Q2TAL8 776 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 CXCL17Q6UXB2 119 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 CYB5R4Q7L1T6 521 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 RALYLQ86SE5 291 aaKnown RBP22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 SCFD2Q8WU76 684 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 MAP4K1Q92918 833 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 JMJD4Q9H9V9 463 aa22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 DDX49Q9Y6V7 483 aaKnown RBP22.23■■□□□ 1.15
CCDC28A-203ENST00000617445 KLRF2D3W0D1 207 aa22.22■■□□□ 1.15
CCDC28A-203ENST00000617445 BRDTQ58F21 947 aaPredicted RBP22.22■■□□□ 1.15
CCDC28A-203ENST00000617445 FAM126BQ8IXS8 530 aa22.22■■□□□ 1.15
CCDC28A-203ENST00000617445 POLR3EQ9NVU0 708 aa22.22■■□□□ 1.15
CCDC28A-203ENST00000617445 PALM3A6NDB9 673 aaPredicted RBP22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 E7EWF7 191 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 IFIT3O14879 490 aaKnown RBP22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 CPT1AP50416 773 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 ITGA7Q13683 1181 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 C9orf50Q5SZB4 431 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 MFSD5Q6N075 450 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 SAMD3Q8N6K7 520 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 NSUN6Q8TEA1 469 aaKnown RBP22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 IWS1Q96ST2 819 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 AMNQ9BXJ7 453 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 VAT1LQ9HCJ6 419 aa22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 MAP3K20Q9NYL2 800 aaKnown RBP22.21■■□□□ 1.15
CCDC28A-203ENST00000617445 CD4P01730 458 aa22.2■■□□□ 1.14
CCDC28A-203ENST00000617445 PPP2R5BQ15173 497 aa22.2■■□□□ 1.14
CCDC28A-203ENST00000617445 STAG2Q8N3U4 1231 aa22.2■■□□□ 1.14
CCDC28A-203ENST00000617445 SYTL5Q8TDW5 730 aaPredicted RBP22.2■■□□□ 1.14
CCDC28A-203ENST00000617445 MTMR8Q96EF0 704 aa22.2■■□□□ 1.14
CCDC28A-203ENST00000617445 MTMR10Q9NXD2 777 aa22.2■■□□□ 1.14
CCDC28A-203ENST00000617445 MAD2L2Q9UI95 211 aa22.2■■□□□ 1.14
CCDC28A-203ENST00000617445 KPNA6O60684 536 aa22.19■■□□□ 1.14
CCDC28A-203ENST00000617445 SMAD3P84022 425 aaKnown RBP22.19■■□□□ 1.14
CCDC28A-203ENST00000617445 PPIGQ13427 754 aaKnown RBP eCLIP22.19■■□□□ 1.14
CCDC28A-203ENST00000617445 TTLL4Q14679 1199 aa22.19■■□□□ 1.14
CCDC28A-203ENST00000617445 WTAPQ15007 396 aa22.19■■□□□ 1.14
CCDC28A-203ENST00000617445 TMEM199Q8N511 208 aa22.19■■□□□ 1.14
CCDC28A-203ENST00000617445 MTA3Q9BTC8 594 aa22.19■■□□□ 1.14
CCDC28A-203ENST00000617445 ZBTB5O15062 677 aa22.18■■□□□ 1.14
CCDC28A-203ENST00000617445 GRM4Q14833 912 aa22.18■■□□□ 1.14
CCDC28A-203ENST00000617445 TMEM63BQ5T3F8 832 aa22.18■■□□□ 1.14
CCDC28A-203ENST00000617445 OR6J1Q8NGC5 347 aa22.18■■□□□ 1.14
CCDC28A-203ENST00000617445 RMDN3Q96TC7 470 aa22.18■■□□□ 1.14
CCDC28A-203ENST00000617445 GPHNQ9NQX3 736 aaPredicted RBP22.18■■□□□ 1.14
CCDC28A-203ENST00000617445 LAMA2P24043 3122 aaKnown RBP22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 BAZ2BQ9UIF8 2168 aaKnown RBP22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 GHRHRQ02643 423 aa22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 STXBP2Q15833 593 aa22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 Q7L0L9 218 aa22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 TBC1D5Q92609 795 aa22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 RNPC3Q96LT9 517 aaKnown RBP22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 TAAR1Q96RJ0 339 aa22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 RIOX1Q9H6W3 641 aa22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 STXBP5LQ9Y2K9 1186 aa22.17■■□□□ 1.14
CCDC28A-203ENST00000617445 RBM8AQ9Y5S9 174 aaKnown RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms