RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 GPSM2P81274 684 aa22.61■■□□□ 1.21
SHKBP1-225ENST00000600733 SOGA3Q5TF21 947 aa22.61■■□□□ 1.21
SHKBP1-225ENST00000600733 KIAA1328Q86T90 577 aa22.61■■□□□ 1.21
SHKBP1-225ENST00000600733 KIAA0895Q8NCT3 520 aa22.61■■□□□ 1.21
SHKBP1-225ENST00000600733 CCDC47Q96A33 483 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-225ENST00000600733 PCMTD1Q96MG8 357 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-225ENST00000600733 RFC4P35249 363 aa22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 NOC4LQ9BVI4 516 aaKnown RBP22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 LACRTQ9GZZ8 138 aa22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 NHEJ1Q9H9Q4 299 aaPredicted RBP22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 CD209Q9NNX6 404 aa22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 RNF216Q9NWF9 866 aaPredicted RBP22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 USP17L5A8MUK1 530 aa22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 TXKP42681 527 aa22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 CNBD1Q8NA66 436 aa22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 SLC39A2Q9NP94 309 aa22.6■■□□□ 1.21
SHKBP1-225ENST00000600733 GPR75-ASB3A0A0A6YYF3 556 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 UFL1O94874 794 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 KRT83P78385 493 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 REXO1Q8N1G1 1221 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 JAKMIP2Q96AA8 810 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 ZBED6P86452 979 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 C8orf37Q96NL8 207 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 NUP58Q9BVL2 599 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 SEMA6BQ9H3T3 888 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 ZNHIT6Q9NWK9 470 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 DUSP10Q9Y6W6 482 aa22.59■■□□□ 1.21
SHKBP1-225ENST00000600733 N4BP1O75113 896 aaKnown RBP22.58■■□□□ 1.21
SHKBP1-225ENST00000600733 CYP27A1Q02318 531 aa22.58■■□□□ 1.21
SHKBP1-225ENST00000600733 FRMPD2Q68DX3 1309 aaPredicted RBP22.58■■□□□ 1.21
SHKBP1-225ENST00000600733 FAM114A1Q8IWE2 563 aa22.58■■□□□ 1.21
SHKBP1-225ENST00000600733 MMS19Q96T76 1030 aa22.58■■□□□ 1.21
SHKBP1-225ENST00000600733 ADAM21Q9UKJ8 722 aa22.58■■□□□ 1.21
SHKBP1-225ENST00000600733 SAR1BQ9Y6B6 198 aa22.58■■□□□ 1.21
SHKBP1-225ENST00000600733 CYLC1P35663 651 aaPredicted RBP22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 HNRNPH2P55795 449 aaKnown RBP22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 RHBDL3P58872 404 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 AMPD3Q01432 767 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 RETREG2Q8NC44 543 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 CALML4Q96GE6 196 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 CAPZA3Q96KX2 299 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 KRT86O43790 486 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 GRB10Q13322 594 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 CNNM4Q6P4Q7 775 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 ZSCAN29Q8IWY8 852 aaPredicted RBP22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 BLOC1S4Q9NUP1 217 aa22.57■■□□□ 1.2
SHKBP1-225ENST00000600733 CASP8Q14790 479 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 MFSD14BQ5SR56 506 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 DNAJC5Q9H3Z4 198 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 SLC37A4O43826 429 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 PLEKP08567 350 aaPredicted RBP22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 TRAPPC3LQ5T215 181 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 PAPD7Q5XG87 772 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 C15orf52Q6ZUT6 534 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 COA7Q96BR5 231 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 NGLY1Q96IV0 654 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 ERGIC2Q96RQ1 377 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 CALCOCO1Q9P1Z2 691 aa22.56■■□□□ 1.2
SHKBP1-225ENST00000600733 MACROD2A1Z1Q3 448 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 MYMKA6NI61 221 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 EIF3CLB5ME19 914 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 IPO7O95373 1038 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 CALCRLQ16602 461 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 ZNF662Q6ZS27 426 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 SV2BQ7L1I2 683 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 DYMQ7RTS9 669 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 RPGRQ92834 1020 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 MTMR9Q96QG7 549 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 EIF3CQ99613 913 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 VPS18Q9P253 973 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 LRWD1Q9UFC0 647 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 TDP2O95551 362 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 PDHBP11177 359 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 GPS2Q13227 327 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 VPS72Q15906 364 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 KRT26Q7Z3Y9 468 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 CCDC170Q8IYT3 715 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 TXLNBQ8N3L3 684 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 PNMA5Q96PV4 448 aa22.55■■□□□ 1.2
SHKBP1-225ENST00000600733 POTEMA6NI47 508 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 ZNF263O14978 683 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 EDIL3O43854 480 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 FKBP15Q5T1M5 1219 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 CENPPQ6IPU0 288 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 PRR5LQ6MZQ0 368 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 WDR93Q6P2C0 686 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 CERS3Q8IU89 383 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 LRRC47Q8N1G4 583 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 EHBP1Q8NDI1 1231 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 GBP3Q9H0R5 595 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 RIOX1Q9H6W3 641 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 TAF1LQ8IZX4 1826 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 LRRIQ3A6PVS8 624 aaPredicted RBP22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 EPHB6O15197 1021 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 EIF3JO75822 258 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 IL1R1P14778 569 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 SMARCA1P28370 1054 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 PPP1R2P41236 205 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 USP14P54578 494 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 EIF6P56537 245 aaKnown RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms