RNA–Protein interactions for RNA: ENST00000557702.5

PABPN1-208, Transcript of poly(A) binding protein nuclear 1, human

TSL 2 BASIC

Gene PABPN1, Length 778 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPN1-208	ENST00000557702	SIGLEC14	Q08ET2	396 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	SMAD4	Q13485	552 aa	Known RBP	11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	GPM6B	Q13491	265 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	IKBKE	Q14164	716 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	EPC2	Q52LR7	807 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	CCDC184	Q52MB2	194 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	TNNI3K	Q59H18	835 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	TAPT1	Q6NXT6	567 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	KIAA1211	Q6ZU35	1233 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	CCDC155	Q8N6L0	562 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	FAM133A	Q8N9E0	248 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	CAGE1	Q8TC20	777 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	AFAP1L1	Q8TED9	768 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	GPR108	Q9NPR9	543 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	COG6	Q9Y2V7	657 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	FPGT-TNNI3K	V9GXZ4	949 aa		11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.34	□□□□□ -0.59
PABPN1-208	ENST00000557702	EPG5	Q9HCE0	2579 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	MED19	A0JLT2	244 aa	Predicted RBP	11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702		H3BNC9	293 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	RGS20	O76081	388 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	CYP2D6	P10635	497 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	OAZ1	P54368	228 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	PTPN11	Q06124	597 aa	Predicted RBP	11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	GPNMB	Q14956	572 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	DUSP28	Q4G0W2	176 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	BRDT	Q58F21	947 aa	Predicted RBP	11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	TMEM63B	Q5T3F8	832 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	FBXO16	Q8IX29	292 aa	Predicted RBP	11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	KIFC2	Q96AC6	838 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	NUP88	Q99567	741 aa	Predicted RBP	11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	DCP1A	Q9NPI6	582 aa	Predicted RBP	11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	HOMER2	Q9NSB8	354 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	DMD	P11532	3685 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	PTPRS	Q13332	1948 aa		11.33	□□□□□ -0.6
PABPN1-208	ENST00000557702	TRIP12	Q14669	1992 aa	Predicted RBP	11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	PLXNA3	P51805	1871 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	KDM4A	O75164	1064 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	CXCL10	P02778	98 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	GNAI3	P08754	354 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	SELP	P16109	830 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	NBL1	P41271	181 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	CDK8	P49336	464 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	CTC1	Q2NKJ3	1217 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	ADSSL1	Q8N142	457 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	SDR42E1	Q8WUS8	393 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	ACAD9	Q9H845	621 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	SLC38A10	Q9HBR0	1119 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	VTA1	Q9NP79	307 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	GVINP1	Q7Z2Y8	2422 aa		11.32	□□□□□ -0.6
PABPN1-208	ENST00000557702	COL4A6	Q14031	1691 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702		F5H6K3	240 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	GALR2	O43603	387 aa	Predicted RBP	11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	KPNA6	O60684	536 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	KLRC3	Q07444	240 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	DLX2	Q07687	328 aa	Predicted RBP	11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	PTGIS	Q16647	500 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	ALDH1L2	Q3SY69	923 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	LRRC8D	Q7L1W4	858 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	DGLUCY	Q7Z3D6	616 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	PPP1R13L	Q8WUF5	828 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	NKD2	Q969F2	451 aa	Predicted RBP	11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	ASIC4	Q96FT7	647 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	A1CF	Q9NQ94	594 aa	Known RBP	11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	CD207	Q9UJ71	328 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	KMT2E	Q8IZD2	1858 aa		11.31	□□□□□ -0.6
PABPN1-208	ENST00000557702	TANC1	Q9C0D5	1861 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	NBN	O60934	754 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	AMH	P03971	560 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	HTRA4	P83105	476 aa	Predicted RBP	11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	TMEM192	Q8IY95	271 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	OR6J1	Q8NGC5	347 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	SP7	Q8TDD2	431 aa	Predicted RBP	11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	WDR11	Q9BZH6	1224 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	ANTXR1	Q9H6X2	564 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	SMC4	Q9NTJ3	1288 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	FEM1B	Q9UK73	627 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	DDX49	Q9Y6V7	483 aa	Known RBP	11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	SCN10A	Q9Y5Y9	1956 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	RAD50	Q92878	1312 aa		11.3	□□□□□ -0.6
PABPN1-208	ENST00000557702	LOC730098	B7Z3J9	87 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	NDUFB10	O96000	172 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	HYAL1	Q12794	435 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	MKRN4P	Q13434	485 aa	Predicted RBP	11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	OS9	Q13438	667 aa	Predicted RBP	11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	CBX2	Q14781	532 aa	Predicted RBP	11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	TCTN1	Q2MV58	587 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	MCTP2	Q6DN12	878 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.29	□□□□□ -0.6	1e-8	■■■■□ 26.3
PABPN1-208	ENST00000557702	C16orf86	Q6ZW13	317 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	AMOTL1	Q8IY63	956 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	MYOCD	Q8IZQ8	938 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	CNTNAP3B	Q96NU0	1288 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	YME1L1	Q96TA2	773 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	CNTNAP3	Q9BZ76	1288 aa		11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	API5	Q9BZZ5	524 aa	Known RBP	11.29	□□□□□ -0.6
PABPN1-208	ENST00000557702	VPS13A	Q96RL7	3174 aa		11.28	□□□□□ -0.6
PABPN1-208	ENST00000557702	PNMA6E	A0A0J9YXQ4	647 aa		11.28	□□□□□ -0.6
PABPN1-208	ENST00000557702	FDX1	P10109	184 aa		11.28	□□□□□ -0.6
PABPN1-208	ENST00000557702	CKB	P12277	381 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms