RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 MTG1Q9BT17 334 aaPredicted RBP20.05■□□□□ 0.8
VPS29-204ENST00000548259 EPB41L4AQ9HCS5 686 aaPredicted RBP20.05■□□□□ 0.8
VPS29-204ENST00000548259 PDGFCQ9NRA1 345 aa20.05■□□□□ 0.8
VPS29-204ENST00000548259 KPNA6O60684 536 aa20.04■□□□□ 0.8
VPS29-204ENST00000548259 FAM47CQ5HY64 1035 aa20.04■□□□□ 0.8
VPS29-204ENST00000548259 WDR11Q9BZH6 1224 aa20.04■□□□□ 0.8
VPS29-204ENST00000548259 TRMT13Q9NUP7 481 aaKnown RBP20.04■□□□□ 0.8
VPS29-204ENST00000548259 MTCH2Q9Y6C9 303 aa20.04■□□□□ 0.8
VPS29-204ENST00000548259 CHD7Q9P2D1 2997 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 TSPY2A6NKD2 308 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 MYL3P08590 195 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 CYP2C9P11712 490 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 KCNQ1P51787 676 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 TTLL4Q14679 1199 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 KCTD1Q719H9 257 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 MORC4Q8TE76 937 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 FTOQ9C0B1 505 aaKnown RBP eCLIP20.03■□□□□ 0.8
VPS29-204ENST00000548259 PNMA2Q9UL42 364 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 PRR12Q9ULL5 1215 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 NOD1Q9Y239 953 aa20.03■□□□□ 0.8
VPS29-204ENST00000548259 PITPNM1O00562 1244 aa20.02■□□□□ 0.8
VPS29-204ENST00000548259 SMARCA5O60264 1052 aaPredicted RBP20.02■□□□□ 0.8
VPS29-204ENST00000548259 ICAM1P05362 532 aa20.02■□□□□ 0.8
VPS29-204ENST00000548259 PPARAQ07869 468 aa20.02■□□□□ 0.8
VPS29-204ENST00000548259 BFSP2Q13515 415 aa20.02■□□□□ 0.8
VPS29-204ENST00000548259 OR6J1Q8NGC5 347 aa20.02■□□□□ 0.8
VPS29-204ENST00000548259 ARNTL2Q8WYA1 636 aa20.02■□□□□ 0.8
VPS29-204ENST00000548259 HLA-CQ95604 372 aa20.02■□□□□ 0.8
VPS29-204ENST00000548259 B4DLN1 442 aa20.01■□□□□ 0.79
VPS29-204ENST00000548259 NKRFO15226 690 aaKnown RBP eCLIP20.01■□□□□ 0.79
VPS29-204ENST00000548259 MRPL12P52815 198 aaKnown RBP20.01■□□□□ 0.79
VPS29-204ENST00000548259 PURAQ00577 322 aaKnown RBP20.01■□□□□ 0.79
VPS29-204ENST00000548259 CCDC96Q2M329 555 aa20.01■□□□□ 0.79
VPS29-204ENST00000548259 MUM1L1Q5H9M0 696 aa20.01■□□□□ 0.79
VPS29-204ENST00000548259 TMEM31Q5JXX7 168 aa20.01■□□□□ 0.79
VPS29-204ENST00000548259 CHMP4CQ96CF2 233 aa20.01■□□□□ 0.79
VPS29-204ENST00000548259 CERS4Q9HA82 394 aa20.01■□□□□ 0.79
VPS29-204ENST00000548259 MCM3APO60318 1980 aa20.01■□□□□ 0.79
VPS29-204ENST00000548259 MYH7P12883 1935 aa20■□□□□ 0.79
VPS29-204ENST00000548259 M0R2C6 588 aa20■□□□□ 0.79
VPS29-204ENST00000548259 BAIAP3O94812 1187 aa20■□□□□ 0.79
VPS29-204ENST00000548259 KCNJ6P48051 423 aa20■□□□□ 0.79
VPS29-204ENST00000548259 PTPN11Q06124 597 aaPredicted RBP20■□□□□ 0.79
VPS29-204ENST00000548259 BAATQ14032 418 aaPredicted RBP20■□□□□ 0.79
VPS29-204ENST00000548259 NFRKBQ6P4R8 1299 aa20■□□□□ 0.79
VPS29-204ENST00000548259 HERC6Q8IVU3 1022 aa20■□□□□ 0.79
VPS29-204ENST00000548259 CCDC155Q8N6L0 562 aa20■□□□□ 0.79
VPS29-204ENST00000548259 DCAF4Q8WV16 495 aa20■□□□□ 0.79
VPS29-204ENST00000548259 PTPDC1A2A3K4 754 aa19.99■□□□□ 0.79
VPS29-204ENST00000548259 RFXAPO00287 272 aa19.99■□□□□ 0.79
VPS29-204ENST00000548259 ALDH5A1P51649 535 aaPredicted RBP19.99■□□□□ 0.79
VPS29-204ENST00000548259 SNAP25P60880 206 aa19.99■□□□□ 0.79
VPS29-204ENST00000548259 PDE4DQ08499 809 aa19.99■□□□□ 0.79
VPS29-204ENST00000548259 PPP2R5BQ15173 497 aa19.99■□□□□ 0.79
VPS29-204ENST00000548259 NBPF20Q3BBV1 942 aa19.99■□□□□ 0.79
VPS29-204ENST00000548259 MYH4Q9Y623 1939 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 TLL1O43897 1013 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 IQCF3P0C7M6 154 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 PTGS1P23219 599 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 HOXD11P31277 338 aaPredicted RBP19.98■□□□□ 0.79
VPS29-204ENST00000548259 TAP1Q03518 808 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 SCFD2Q8WU76 684 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 LRFN3Q9BTN0 628 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 MTMR7Q9Y216 660 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 DDX49Q9Y6V7 483 aaKnown RBP19.98■□□□□ 0.79
VPS29-204ENST00000548259 XIRP2A4UGR9 3374 aa19.98■□□□□ 0.79
VPS29-204ENST00000548259 RBM47A0AV96 593 aaKnown RBP19.97■□□□□ 0.79
VPS29-204ENST00000548259 TMEM63BQ5T3F8 832 aa19.97■□□□□ 0.79
VPS29-204ENST00000548259 VWCEQ96DN2 955 aa19.97■□□□□ 0.79
VPS29-204ENST00000548259 ZBED2Q9BTP6 218 aa19.97■□□□□ 0.79
VPS29-204ENST00000548259 FSD1Q9BTV5 496 aa19.97■□□□□ 0.79
VPS29-204ENST00000548259 RANBP17Q9H2T7 1088 aaKnown RBP19.97■□□□□ 0.79
VPS29-204ENST00000548259 RANBP6O60518 1105 aaKnown RBP19.96■□□□□ 0.79
VPS29-204ENST00000548259 PARNO95453 639 aaKnown RBP19.96■□□□□ 0.79
VPS29-204ENST00000548259 LMCD1Q9NZU5 365 aa19.96■□□□□ 0.79
VPS29-204ENST00000548259 CALML3P27482 149 aa19.95■□□□□ 0.78
VPS29-204ENST00000548259 SYDE2Q5VT97 1194 aa19.95■□□□□ 0.78
VPS29-204ENST00000548259 TSHZ3Q63HK5 1081 aa19.95■□□□□ 0.78
VPS29-204ENST00000548259 RNF207Q6ZRF8 634 aa19.95■□□□□ 0.78
VPS29-204ENST00000548259 CAGE1Q8TC20 777 aa19.95■□□□□ 0.78
VPS29-204ENST00000548259 PURBQ96QR8 312 aaKnown RBP19.95■□□□□ 0.78
VPS29-204ENST00000548259 EPHX3Q9H6B9 360 aa19.95■□□□□ 0.78
VPS29-204ENST00000548259 TTC41PQ6P2S7 1318 aa19.95■□□□□ 0.78
VPS29-204ENST00000548259 TRANK1O15050 2925 aa19.95■□□□□ 0.78
VPS29-204ENST00000548259 A6NJR5 290 aa19.94■□□□□ 0.78
VPS29-204ENST00000548259 GRB10Q13322 594 aa19.94■□□□□ 0.78
VPS29-204ENST00000548259 BTNL9Q6UXG8 535 aa19.94■□□□□ 0.78
VPS29-204ENST00000548259 DNERQ8NFT8 737 aa19.94■□□□□ 0.78
VPS29-204ENST00000548259 AFAP1L1Q8TED9 768 aa19.94■□□□□ 0.78
VPS29-204ENST00000548259 IL17RBQ9NRM6 502 aa19.94■□□□□ 0.78
VPS29-204ENST00000548259 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.94■□□□□ 0.78
VPS29-204ENST00000548259 PRRC2BQ5JSZ5 2229 aaKnown RBP19.93■□□□□ 0.78
VPS29-204ENST00000548259 EPOPA6NHQ4 379 aa19.93■□□□□ 0.78
VPS29-204ENST00000548259 NFIBO00712 420 aa19.93■□□□□ 0.78
VPS29-204ENST00000548259 TXNP10599 105 aaKnown RBP19.93■□□□□ 0.78
VPS29-204ENST00000548259 CHMP4BP1P59074 171 aa19.93■□□□□ 0.78
VPS29-204ENST00000548259 PTGISQ16647 500 aa19.93■□□□□ 0.78
VPS29-204ENST00000548259 ZMYM1Q5SVZ6 1142 aa19.93■□□□□ 0.78
VPS29-204ENST00000548259 SEC62Q99442 399 aaKnown RBP19.93■□□□□ 0.78
VPS29-204ENST00000548259 DCTPP1Q9H773 170 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms