RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 USP17L8P0C7I0 530 aa14.34□□□□□ -0.11
MSH6-210ENST00000540021 GNA11P29992 359 aa14.34□□□□□ -0.11
MSH6-210ENST00000540021 PMS1P54277 932 aaKnown RBP14.34□□□□□ -0.11
MSH6-210ENST00000540021 MAP2K1Q02750 393 aaPredicted RBP14.34□□□□□ -0.11
MSH6-210ENST00000540021 E2F5Q15329 346 aa14.34□□□□□ -0.11
MSH6-210ENST00000540021 SUSD4Q5VX71 490 aa14.34□□□□□ -0.11
MSH6-210ENST00000540021 MSL1Q68DK7 614 aa14.34□□□□□ -0.11
MSH6-210ENST00000540021 GPCPD1Q9NPB8 672 aa14.34□□□□□ -0.11
MSH6-210ENST00000540021 USP17L3A6NCW0 530 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 USP17L4A6NCW7 530 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 LRRC53A6NM62 1247 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 TMEM110-MUSTN1A8MSY1 372 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 ARHGAP25P42331 645 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 PICALMQ13492 652 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 RPS6KA1Q15418 735 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 HERC4Q5GLZ8 1057 aaPredicted RBP14.33□□□□□ -0.12
MSH6-210ENST00000540021 ANKRD40Q6AI12 368 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 USP17L1Q7RTZ2 530 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 TRAPPC11Q7Z392 1133 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 CCDC170Q8IYT3 715 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 NDST4Q9H3R1 872 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 THAP9Q9H5L6 903 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 CAPN11Q9UMQ6 739 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 ABCC12Q96J65 1359 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 PNMA8AQ86V59 439 aaPredicted RBP14.33□□□□□ -0.12
MSH6-210ENST00000540021 CCDC25Q86WR0 208 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 FNBP4Q8N3X1 1017 aaPredicted RBP14.33□□□□□ -0.12
MSH6-210ENST00000540021 TBC1D5Q92609 795 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 DDAH1O94760 285 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 MYBL2P10244 700 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 NR1D1P20393 614 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 HERVK_113P62684 666 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 MCTP2Q6DN12 878 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 TGFBRAP1Q8WUH2 860 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 PCDHA4Q9UN74 947 aa14.33□□□□□ -0.12
MSH6-210ENST00000540021 AKAP12Q02952 1782 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 ITIH6Q6UXX5 1313 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 KLRF2D3W0D1 207 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 F8W031 263 aaPredicted RBP14.32□□□□□ -0.12
MSH6-210ENST00000540021 BAG3O95817 575 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 CALCRLQ16602 461 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 DHTKD1Q96HY7 919 aaPredicted RBP14.32□□□□□ -0.12
MSH6-210ENST00000540021 ADAMTS1Q9UHI8 967 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 PSMD14O00487 310 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 CSF1RP07333 972 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 TRAPPC10P48553 1259 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 STK4Q13043 487 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 NT5DC1Q5TFE4 455 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 ADSSL1Q8N142 457 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 ARL8AQ96BM9 186 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 AP1M1Q9BXS5 423 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 ZNF287Q9HBT7 754 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 BAIAP2L1Q9UHR4 511 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 CAPN6Q9Y6Q1 641 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 HIBADHP31937 336 aaKnown RBP14.32□□□□□ -0.12
MSH6-210ENST00000540021 SEC24CP53992 1094 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 ASIC2Q16515 512 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 TXNRD1Q16881 649 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 STAG2Q8N3U4 1231 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 SNX12Q9UMY4 172 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 MEGF6O75095 1541 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 AGLP35573 1532 aa14.32□□□□□ -0.12
MSH6-210ENST00000540021 EZRP15311 586 aaKnown RBP14.31□□□□□ -0.12
MSH6-210ENST00000540021 APBA1Q02410 837 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 NAA25Q14CX7 972 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 WDR93Q6P2C0 686 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 DAAM2Q86T65 1068 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 TMEM60Q9H2L4 133 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 VIMP08670 466 aaKnown RBP14.31□□□□□ -0.12
MSH6-210ENST00000540021 ZNF76P36508 570 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 KCNQ4P56696 695 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 ACTN3Q08043 901 aaPredicted RBP14.31□□□□□ -0.12
MSH6-210ENST00000540021 FRMPD2Q68DX3 1309 aaPredicted RBP14.31□□□□□ -0.12
MSH6-210ENST00000540021 LRP10Q7Z4F1 713 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 NBPF5PQ86XG9 351 aaPredicted RBP14.31□□□□□ -0.12
MSH6-210ENST00000540021 REXO1Q8N1G1 1221 aaKnown RBP14.31□□□□□ -0.12
MSH6-210ENST00000540021 FAM133AQ8N9E0 248 aa14.31□□□□□ -0.12
MSH6-210ENST00000540021 CDHR2Q9BYE9 1310 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 MYO1FO00160 1098 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 PDE2AO00408 941 aaPredicted RBP14.3□□□□□ -0.12
MSH6-210ENST00000540021 PALMO75781 387 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 VEGFAP15692 232 aaPredicted RBP14.3□□□□□ -0.12
MSH6-210ENST00000540021 VIPAS39Q9H9C1 493 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 RBM12Q9NTZ6 932 aaKnown RBP14.3□□□□□ -0.12
MSH6-210ENST00000540021 FAM237AA0A1B0GTK4 181 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 LDHBP07195 334 aaKnown RBP14.3□□□□□ -0.12
MSH6-210ENST00000540021 SLC1A4P43007 532 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 SF3B2Q13435 895 aaKnown RBP14.3□□□□□ -0.12
MSH6-210ENST00000540021 KSR1Q8IVT5 923 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 RETREG2Q8NC44 543 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 SLC44A5Q8NCS7 719 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 TBC1D31Q96DN5 1066 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 SYF2O95926 243 aaKnown RBP14.3□□□□□ -0.12
MSH6-210ENST00000540021 RPSAP08865 295 aaKnown RBP14.3□□□□□ -0.12
MSH6-210ENST00000540021 ABCB4P21439 1286 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 CARSP49589 748 aaKnown RBP14.3□□□□□ -0.12
MSH6-210ENST00000540021 CCDC155Q8N6L0 562 aa14.3□□□□□ -0.12
MSH6-210ENST00000540021 PIK3C2AO00443 1686 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 ANO9A1A5B4 782 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 KRIT1O00522 736 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms