RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ADAMTS3O15072 1205 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 BRD1O95696 1058 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 MCM7P33993 719 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 MAP3K11Q16584 847 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 ZSCAN26Q16670 478 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 SLC35G1Q2M3R5 365 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 LETM2Q2VYF4 491 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 GPATCH4Q5T3I0 446 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 FBXO11Q86XK2 927 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 BANK1Q8NDB2 785 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 SMARCC2Q8TAQ2 1214 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 CACTINQ8WUQ7 758 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 RNF26Q9BY78 433 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 TCP11L1Q9NUJ3 509 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 DNAI1Q9UI46 699 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 LCMT1Q9UIC8 334 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 TMX2Q9Y320 296 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 MRVI1Q9Y6F6 885 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 DDX60LQ5H9U9 1706 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 PALM3A6NDB9 673 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 NPM3O75607 178 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 CALML3P27482 149 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 KRT2P35908 639 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 KRT85P78386 507 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 BMS1Q14692 1282 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 INF2Q27J81 1249 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 TYW1BQ6NUM6 668 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 BIN1O00499 593 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 BACE1P56817 501 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 LEKR1Q6ZMV7 388 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 CHURC1Q8WUH1 139 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 WNK4Q96J92 1243 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 SNCAIPQ9Y6H5 919 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 PRPF3O43395 683 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 CYP2C8P10632 490 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 FAM193AP78312 1265 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 TREML2Q5T2D2 321 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 CHADLQ6NUI6 762 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 TBC1D5Q92609 795 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 ARGLU1Q9NWB6 273 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 TIAM2Q8IVF5 1701 aa9.8□□□□□ -0.84
LIMCH1-209ENST00000509277 MYO1CO00159 1063 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 ZNF76P36508 570 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 PKN1Q16512 942 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 NCAPG2Q86XI2 1143 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 ZC3H15Q8WU90 426 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 ANKRD7Q92527 254 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 CCDC102AQ96A19 550 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 USP28Q96RU2 1077 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 EMILIN3Q9NT22 766 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 IGKV6D-41A0A0C4DH26 115 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 MNAT1P51948 309 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 TYRO3Q06418 890 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 PDILTQ8N807 584 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 PSTPIP2Q9H939 334 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 C6orf50Q9HD87 102 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 CLIC4Q9Y696 253 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 TBC1D12O60347 775 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 EVCP57679 992 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 SP4Q02446 784 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 PFKFB3Q16875 520 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 DCAF4Q8WV16 495 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 IL17RAQ96F46 866 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 PLIN2Q99541 437 aa9.79□□□□□ -0.84
LIMCH1-209ENST00000509277 CCL15-CCL14A0A0B4J2E2 113 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 ZBTB5O15062 677 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 SLU7O95391 586 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 ADCY7P51828 1080 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 KIF23Q02241 960 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 CCL15Q16663 113 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 EARS2Q5JPH6 523 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 BLIDQ8IZY5 108 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 LRRN4CLQ8ND94 238 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 GJA10Q969M2 543 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 SLF1Q9BQI6 1058 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 CWC15Q9P013 229 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 PPP2R3BQ9Y5P8 575 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 ZBED4O75132 1171 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 MMP1P03956 469 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 LIG1P18858 919 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 OAS2P29728 719 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 USP14P54578 494 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 SNRNP48Q6IEG0 339 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 ERO1BQ86YB8 467 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 CCDC148Q8NFR7 591 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 SMARCE1Q969G3 411 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 PURBQ96QR8 312 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 AMNQ9BXJ7 453 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 CENPHQ9H3R5 247 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 VPS18Q9P253 973 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 PGAP2Q9UHJ9 254 aa9.78□□□□□ -0.84
LIMCH1-209ENST00000509277 NRDCO43847 1150 aa9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 MYCLP12524 364 aaPredicted RBP9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 UBE2HP62256 183 aa9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 TPM4P67936 248 aa9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 SNW1Q13573 536 aaKnown RBP9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 EEPD1Q7L9B9 569 aa9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 REXO1Q8N1G1 1221 aaKnown RBP9.77□□□□□ -0.84
LIMCH1-209ENST00000509277 CUL5Q93034 780 aa9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms