RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 PFKMP08237 780 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 KCNQ1P51787 676 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 PPARAQ07869 468 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 AAK1Q2M2I8 961 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 DUSP28Q4G0W2 176 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 TMEM67Q5HYA8 995 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 RCSD1Q6JBY9 416 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 MORC4Q8TE76 937 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 FAM122AQ96E09 287 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 NAPBQ9H115 298 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 CERS4Q9HA82 394 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 CCPG1Q9ULG6 757 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 STX8Q9UNK0 236 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 ERC2O15083 957 aa16.55■□□□□ 0.24
VARS-227ENST00000489979 GTPBP6O43824 516 aaPredicted RBP16.55■□□□□ 0.24
VARS-227ENST00000489979 MYL3P08590 195 aa16.55■□□□□ 0.24
VARS-227ENST00000489979 SUPT20HL2P0C7V6 817 aa16.55■□□□□ 0.24
VARS-227ENST00000489979 C1QTNF1Q9BXJ1 281 aa16.55■□□□□ 0.24
VARS-227ENST00000489979 WDR11Q9BZH6 1224 aa16.55■□□□□ 0.24
VARS-227ENST00000489979 POLR3EQ9NVU0 708 aa16.55■□□□□ 0.24
VARS-227ENST00000489979 MTMR7Q9Y216 660 aa16.55■□□□□ 0.24
VARS-227ENST00000489979 MTCH2Q9Y6C9 303 aa16.55■□□□□ 0.24
VARS-227ENST00000489979 EPOPA6NHQ4 379 aa16.54■□□□□ 0.24
VARS-227ENST00000489979 NMT2O60551 498 aa16.54■□□□□ 0.24
VARS-227ENST00000489979 POU3F3P20264 500 aaPredicted RBP16.54■□□□□ 0.24
VARS-227ENST00000489979 PURAQ00577 322 aaKnown RBP16.54■□□□□ 0.24
VARS-227ENST00000489979 BAATQ14032 418 aaPredicted RBP16.54■□□□□ 0.24
VARS-227ENST00000489979 LRRFIP1Q32MZ4 808 aaKnown RBP16.54■□□□□ 0.24
VARS-227ENST00000489979 PPP4R3BQ5MIZ7 849 aa16.54■□□□□ 0.24
VARS-227ENST00000489979 INCENPQ9NQS7 918 aa16.54■□□□□ 0.24
VARS-227ENST00000489979 IL17RBQ9NRM6 502 aa16.54■□□□□ 0.24
VARS-227ENST00000489979 SCN10AQ9Y5Y9 1956 aa16.53■□□□□ 0.24
VARS-227ENST00000489979 TSPY2A6NKD2 308 aa16.53■□□□□ 0.24
VARS-227ENST00000489979 ICAM1P05362 532 aa16.53■□□□□ 0.24
VARS-227ENST00000489979 ACTN1P12814 892 aa16.53■□□□□ 0.24
VARS-227ENST00000489979 CPT1AP50416 773 aa16.53■□□□□ 0.24
VARS-227ENST00000489979 ALDH5A1P51649 535 aaPredicted RBP16.53■□□□□ 0.24
VARS-227ENST00000489979 CCDC96Q2M329 555 aa16.53■□□□□ 0.24
VARS-227ENST00000489979 KRT40Q6A162 431 aa16.53■□□□□ 0.24
VARS-227ENST00000489979 SLC9A7Q96T83 725 aa16.53■□□□□ 0.24
VARS-227ENST00000489979 MTG1Q9BT17 334 aaPredicted RBP16.53■□□□□ 0.24
VARS-227ENST00000489979 ADD3Q9UEY8 706 aaKnown RBP16.53■□□□□ 0.24
VARS-227ENST00000489979 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.53■□□□□ 0.24
VARS-227ENST00000489979 TET1Q8NFU7 2136 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 CTDSPL2Q05D32 466 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 NBPF20Q3BBV1 942 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 FAM47CQ5HY64 1035 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 C20orf194Q5TEA3 1177 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 TTBK2Q6IQ55 1244 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 OR6J1Q8NGC5 347 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 PPP1R13LQ8WUF5 828 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 ARNTL2Q8WYA1 636 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 RANBP17Q9H2T7 1088 aaKnown RBP16.52■□□□□ 0.24
VARS-227ENST00000489979 DCTPP1Q9H773 170 aa16.52■□□□□ 0.24
VARS-227ENST00000489979 GPHNQ9NQX3 736 aaPredicted RBP16.52■□□□□ 0.24
VARS-227ENST00000489979 RBM47A0AV96 593 aaKnown RBP16.51■□□□□ 0.23
VARS-227ENST00000489979 PTPDC1A2A3K4 754 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 NFIBO00712 420 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 ARHGEF15O94989 841 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 RFC2P35250 354 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 SLC16A2P36021 539 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 TAP1Q03518 808 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 ZMYM1Q5SVZ6 1142 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 MIER1Q8N108 512 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 PHOSPHO2Q8TCD6 241 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 DCAF4Q8WV16 495 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 EPHX3Q9H6B9 360 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 COG5Q9UP83 839 aa16.51■□□□□ 0.23
VARS-227ENST00000489979 TRIP12Q14669 1992 aaPredicted RBP16.51■□□□□ 0.23
VARS-227ENST00000489979 TANC1Q9C0D5 1861 aa16.5■□□□□ 0.23
VARS-227ENST00000489979 LOC102724159A0A0B4J2E5 919 aa16.5■□□□□ 0.23
VARS-227ENST00000489979 RANBP6O60518 1105 aaKnown RBP16.5■□□□□ 0.23
VARS-227ENST00000489979 IQCF3P0C7M6 154 aa16.5■□□□□ 0.23
VARS-227ENST00000489979 PWP2Q15269 919 aaKnown RBP16.5■□□□□ 0.23
VARS-227ENST00000489979 BRDTQ58F21 947 aaPredicted RBP16.5■□□□□ 0.23
VARS-227ENST00000489979 HERC6Q8IVU3 1022 aa16.5■□□□□ 0.23
VARS-227ENST00000489979 RETREG2Q8NC44 543 aa16.5■□□□□ 0.23
VARS-227ENST00000489979 FSD1Q9BTV5 496 aa16.5■□□□□ 0.23
VARS-227ENST00000489979 FTOQ9C0B1 505 aaKnown RBP eCLIP16.5■□□□□ 0.23
VARS-227ENST00000489979 KIF28PB7ZC32 967 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 PITPNM1O00562 1244 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 FOXP2O15409 715 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 TLL1O43897 1013 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 CALML3P27482 149 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 NOVP48745 357 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 SYDE2Q5VT97 1194 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 NFRKBQ6P4R8 1299 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 BTNL9Q6UXG8 535 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 SLC30A10Q6XR72 485 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 COPS5Q92905 334 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 LRFN3Q9BTN0 628 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 PTPRSQ13332 1948 aa16.49■□□□□ 0.23
VARS-227ENST00000489979 TTC41PQ6P2S7 1318 aa16.48■□□□□ 0.23
VARS-227ENST00000489979 RAD50Q92878 1312 aa16.48■□□□□ 0.23
VARS-227ENST00000489979 NKRFO15226 690 aaKnown RBP eCLIP16.48■□□□□ 0.23
VARS-227ENST00000489979 GRB10Q13322 594 aa16.48■□□□□ 0.23
VARS-227ENST00000489979 BFSP2Q13515 415 aa16.48■□□□□ 0.23
VARS-227ENST00000489979 PPP2R5BQ15173 497 aa16.48■□□□□ 0.23
VARS-227ENST00000489979 PI4K2BQ8TCG2 481 aa16.48■□□□□ 0.23
VARS-227ENST00000489979 HLA-CQ95604 372 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms