RNA–Protein interactions for RNA: ENST00000433260.1

HMGB3P24-201, Transcript of high mobility group box 3 pseudogene 24, humanhuman

BASIC

Gene HMGB3P24, Length 622 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P24-201ENST00000433260 SNHG28P0DPA3 235 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 FDX1P10109 184 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 XRCC5P13010 732 aaKnown RBP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 RXRAP19793 462 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 MLLT1Q03111 559 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 SART3Q15020 963 aaKnown RBP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 TMEM132AQ24JP5 1023 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 PROX2Q3B8N5 592 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 USH1GQ495M9 461 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 MUM1L1Q5H9M0 696 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 GPATCH4Q5T3I0 446 aaKnown RBP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 MFSD14CQ5VZR4 134 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 BTNL9Q6UXG8 535 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 NSMFQ6X4W1 530 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 CATIPQ7Z7H3 387 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 CMTR1Q8N1G2 835 aaKnown RBP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 PIBF1Q8WXW3 757 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 PURBQ96QR8 312 aaKnown RBP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 APBA2Q99767 749 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 KDM4CQ9H3R0 1056 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 HMX1Q9NP08 348 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 RNF146Q9NTX7 359 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 SLC5A4Q9NY91 659 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 KIAA1468Q9P260 1216 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 RABGEF1Q9UJ41 708 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 CCPG1Q9ULG6 757 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 NAP1L2Q9ULW6 460 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 RPTORQ8N122 1335 aa6.73□□□□□ -1.33
HMGB3P24-201ENST00000433260 PTPDC1A2A3K4 754 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 PALM3A6NDB9 673 aaPredicted RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 TK2O00142 265 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 ATP2A1O14983 1001 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 PLA2G6O60733 806 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 REC8O95072 547 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 ICAM1P05362 532 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 DNAJB2P25686 324 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 CALML3P27482 149 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 HSPA4P34932 840 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 NT5C2P49902 561 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 OAZ1P54368 228 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 FGD1P98174 961 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 MDM2Q00987 491 aaPredicted RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 EXOSC10Q01780 885 aaKnown RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 CNTN2Q02246 1040 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 GRM4Q14833 912 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 ZNF792Q3KQV3 632 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 ASPRV1Q53RT3 343 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 ANO1Q5XXA6 986 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 DHX32Q7L7V1 743 aaKnown RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 HOMER1Q86YM7 354 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 TRMT44Q8IYL2 757 aaKnown RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 CCDC82Q8N4S0 544 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 TRPV1Q8NER1 839 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 CHST13Q8NET6 341 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 U2AF1L4Q8WU68 220 aaKnown RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 TBC1D5Q92609 795 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 MAML3Q96JK9 1138 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 JAKMIP1Q96N16 626 aaKnown RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 USP26Q9BXU7 913 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 RANBP17Q9H2T7 1088 aaKnown RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 ACAD9Q9H845 621 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 JMJD4Q9H9V9 463 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 LY9Q9HBG7 655 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 FBXO40Q9UH90 709 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 MAD2L2Q9UI95 211 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 SNX14Q9Y5W7 946 aa6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 DDX49Q9Y6V7 483 aaKnown RBP6.72□□□□□ -1.33
HMGB3P24-201ENST00000433260 SOWAHBA6NEL2 793 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 SH2B2O14492 632 aaPredicted RBP6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 GJB1P08034 283 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 HOXC6P09630 235 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 COPB2P35606 906 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 GJA8P48165 433 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 RGS19P49795 217 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 TROAPQ12815 778 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 BAATQ14032 418 aaPredicted RBP6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 CDC37Q16543 378 aaPredicted RBP6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 QRICH1Q2TAL8 776 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 TSGA10IPQ3SY00 556 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 DMRTA1Q5VZB9 504 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 SYNE3Q6ZMZ3 975 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 Q6ZUG5 572 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 EEPD1Q7L9B9 569 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 PARP9Q8IXQ6 854 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 ZNF654Q8IZM8 581 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 ABRAQ8N0Z2 381 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 TMTC2Q8N394 836 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 CTCFLQ8NI51 663 aaPredicted RBP6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 TMEM87BQ96K49 555 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 PIGSQ96S52 555 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 TINF2Q9BSI4 451 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 BRPF3Q9ULD4 1205 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 SLC12A7Q9Y666 1083 aa6.71□□□□□ -1.34
HMGB3P24-201ENST00000433260 RBBP6Q7Z6E9 1792 aaKnown RBP6.7□□□□□ -1.34
HMGB3P24-201ENST00000433260 DNAJC25-GNG10A0A024R161 153 aa6.7□□□□□ -1.34
HMGB3P24-201ENST00000433260 hCG_1642624A0A1W2PR95 340 aa6.7□□□□□ -1.34
HMGB3P24-201ENST00000433260 RCCD1A6NED2 376 aa6.7□□□□□ -1.34
HMGB3P24-201ENST00000433260 NFIBO00712 420 aa6.7□□□□□ -1.34
HMGB3P24-201ENST00000433260 PLEKHA8P1O95397 391 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms