RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ABCB11O95342 1321 aa22.22■■□□□ 1.15
SF3A1-202ENST00000411423 C6orf222P0C671 652 aaPredicted RBP22.21■■□□□ 1.15
SF3A1-202ENST00000411423 EDNRBP24530 442 aa22.21■■□□□ 1.15
SF3A1-202ENST00000411423 CST5P28325 142 aaPredicted RBP22.21■■□□□ 1.15
SF3A1-202ENST00000411423 BEX3Q00994 111 aa22.21■■□□□ 1.15
SF3A1-202ENST00000411423 SH3RF1Q7Z6J0 888 aa22.21■■□□□ 1.15
SF3A1-202ENST00000411423 FBXO11Q86XK2 927 aa22.21■■□□□ 1.15
SF3A1-202ENST00000411423 RGS22Q8NE09 1264 aa22.21■■□□□ 1.15
SF3A1-202ENST00000411423 TSEN34Q9BSV6 310 aaKnown RBP22.21■■□□□ 1.15
SF3A1-202ENST00000411423 LRRC2Q9BYS8 371 aa22.21■■□□□ 1.15
SF3A1-202ENST00000411423 RIOX1Q9H6W3 641 aa22.21■■□□□ 1.15
SF3A1-202ENST00000411423 MYH6P13533 1939 aa22.21■■□□□ 1.15
SF3A1-202ENST00000411423 LTBP2Q14767 1821 aa22.2■■□□□ 1.14
SF3A1-202ENST00000411423 ERICH2A1L162 156 aa22.2■■□□□ 1.14
SF3A1-202ENST00000411423 SH2B2O14492 632 aaPredicted RBP22.2■■□□□ 1.14
SF3A1-202ENST00000411423 NKX3-2P78367 333 aa22.2■■□□□ 1.14
SF3A1-202ENST00000411423 C1orf53Q5VUE5 145 aa22.2■■□□□ 1.14
SF3A1-202ENST00000411423 RASEFQ8IZ41 740 aa22.2■■□□□ 1.14
SF3A1-202ENST00000411423 SYTL5Q8TDW5 730 aaPredicted RBP22.2■■□□□ 1.14
SF3A1-202ENST00000411423 TAAR1Q96RJ0 339 aa22.2■■□□□ 1.14
SF3A1-202ENST00000411423 PIGSQ96S52 555 aa22.2■■□□□ 1.14
SF3A1-202ENST00000411423 VTA1Q9NP79 307 aa22.2■■□□□ 1.14
SF3A1-202ENST00000411423 LAMA3Q16787 3333 aa22.19■■□□□ 1.14
SF3A1-202ENST00000411423 TRIOBPQ9H2D6 2365 aa22.19■■□□□ 1.14
SF3A1-202ENST00000411423 ASGR1P07306 291 aa22.19■■□□□ 1.14
SF3A1-202ENST00000411423 MDM2Q00987 491 aaPredicted RBP22.19■■□□□ 1.14
SF3A1-202ENST00000411423 TLK2Q86UE8 772 aa22.19■■□□□ 1.14
SF3A1-202ENST00000411423 ADD3Q9UEY8 706 aaKnown RBP22.19■■□□□ 1.14
SF3A1-202ENST00000411423 SZT2Q5T011 3432 aa22.19■■□□□ 1.14
SF3A1-202ENST00000411423 TRIM43BA6NCK2 446 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 ZBTB5O15062 677 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 BMP8BP34820 402 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 TLE2Q04725 743 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 SART3Q15020 963 aaKnown RBP22.18■■□□□ 1.14
SF3A1-202ENST00000411423 ADCK5Q3MIX3 580 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 HOMER1Q86YM7 354 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 ZNF654Q8IZM8 581 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 NUP133Q8WUM0 1156 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 TRIM43Q96BQ3 446 aaPredicted RBP22.18■■□□□ 1.14
SF3A1-202ENST00000411423 PDLIM7Q9NR12 457 aa22.18■■□□□ 1.14
SF3A1-202ENST00000411423 RBM47A0AV96 593 aaKnown RBP22.17■■□□□ 1.14
SF3A1-202ENST00000411423 MOXD2PA6NHM9 499 aa22.17■■□□□ 1.14
SF3A1-202ENST00000411423 DYNC1LI2O43237 492 aaPredicted RBP22.17■■□□□ 1.14
SF3A1-202ENST00000411423 MCM5P33992 734 aa22.17■■□□□ 1.14
SF3A1-202ENST00000411423 GNASQ5JWF2 1037 aa22.17■■□□□ 1.14
SF3A1-202ENST00000411423 IQSEC1Q6DN90 963 aa22.17■■□□□ 1.14
SF3A1-202ENST00000411423 CATIPQ7Z7H3 387 aa22.17■■□□□ 1.14
SF3A1-202ENST00000411423 RAB11FIP4Q86YS3 637 aa22.17■■□□□ 1.14
SF3A1-202ENST00000411423 DNERQ8NFT8 737 aa22.17■■□□□ 1.14
SF3A1-202ENST00000411423 AMNQ9BXJ7 453 aa22.17■■□□□ 1.14
SF3A1-202ENST00000411423 BAZ2BQ9UIF8 2168 aaKnown RBP22.16■■□□□ 1.14
SF3A1-202ENST00000411423 LOC102724159A0A0B4J2E5 919 aa22.16■■□□□ 1.14
SF3A1-202ENST00000411423 SOX1O00570 391 aaPredicted RBP22.16■■□□□ 1.14
SF3A1-202ENST00000411423 RXRAP19793 462 aa22.16■■□□□ 1.14
SF3A1-202ENST00000411423 ITGB8P26012 769 aa22.16■■□□□ 1.14
SF3A1-202ENST00000411423 PWP2Q15269 919 aaKnown RBP22.16■■□□□ 1.14
SF3A1-202ENST00000411423 CASC1Q6TDU7 716 aa22.16■■□□□ 1.14
SF3A1-202ENST00000411423 NOL8Q76FK4 1167 aaKnown RBP22.16■■□□□ 1.14
SF3A1-202ENST00000411423 TCEANC2Q96MN5 208 aa22.16■■□□□ 1.14
SF3A1-202ENST00000411423 MTA3Q9BTC8 594 aa22.16■■□□□ 1.14
SF3A1-202ENST00000411423 STARD7Q9NQZ5 370 aa22.16■■□□□ 1.14
SF3A1-202ENST00000411423 MRPL11Q9Y3B7 192 aaKnown RBP22.16■■□□□ 1.14
SF3A1-202ENST00000411423 ARIH2O95376 493 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 PLEKHA8P1O95397 391 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 HSD17B4P51659 736 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 GHRHRQ02643 423 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 DUSP28Q4G0W2 176 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 PIBF1Q8WXW3 757 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 COPS5Q92905 334 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 TMEM87BQ96K49 555 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 WDR11Q9BZH6 1224 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 PRDM5Q9NQX1 630 aaPredicted RBP22.15■■□□□ 1.14
SF3A1-202ENST00000411423 PCDHA1Q9Y5I3 950 aa22.15■■□□□ 1.14
SF3A1-202ENST00000411423 PQBP1O60828 265 aaKnown RBP22.14■■□□□ 1.13
SF3A1-202ENST00000411423 DDAH1O94760 285 aa22.14■■□□□ 1.13
SF3A1-202ENST00000411423 CFBP00751 764 aa22.14■■□□□ 1.13
SF3A1-202ENST00000411423 CDK7P50613 346 aa22.14■■□□□ 1.13
SF3A1-202ENST00000411423 EXOSC10Q01780 885 aaKnown RBP22.14■■□□□ 1.13
SF3A1-202ENST00000411423 PDE4DQ08499 809 aa22.14■■□□□ 1.13
SF3A1-202ENST00000411423 CMTR1Q8N1G2 835 aaKnown RBP22.14■■□□□ 1.13
SF3A1-202ENST00000411423 PCSK9Q8NBP7 692 aaKnown RBP22.14■■□□□ 1.13
SF3A1-202ENST00000411423 MAP3K14Q99558 947 aa22.14■■□□□ 1.13
SF3A1-202ENST00000411423 SPC25Q9HBM1 224 aa22.14■■□□□ 1.13
SF3A1-202ENST00000411423 GRIN2DO15399 1336 aa22.13■■□□□ 1.13
SF3A1-202ENST00000411423 NEFLP07196 543 aa22.13■■□□□ 1.13
SF3A1-202ENST00000411423 LIFRP42702 1097 aa22.13■■□□□ 1.13
SF3A1-202ENST00000411423 FAAP100Q0VG06 881 aa22.13■■□□□ 1.13
SF3A1-202ENST00000411423 FSCN1Q16658 493 aaKnown RBP22.13■■□□□ 1.13
SF3A1-202ENST00000411423 TSGA10IPQ3SY00 556 aa22.13■■□□□ 1.13
SF3A1-202ENST00000411423 CXCL17Q6UXB2 119 aa22.13■■□□□ 1.13
SF3A1-202ENST00000411423 MCF2L2Q86YR7 1114 aa22.13■■□□□ 1.13
SF3A1-202ENST00000411423 SRBD1Q8N5C6 995 aaKnown RBP22.13■■□□□ 1.13
SF3A1-202ENST00000411423 UBE2OQ9C0C9 1292 aaKnown RBP22.13■■□□□ 1.13
SF3A1-202ENST00000411423 Q9Y3F1 56 aa22.13■■□□□ 1.13
SF3A1-202ENST00000411423 ELP1O95163 1332 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 PNMA6FA0A0J9YX94 578 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 A0A1W2PPC1 479 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 EIF2AK2P19525 551 aaKnown RBP22.12■■□□□ 1.13
SF3A1-202ENST00000411423 HOXA13P31271 388 aaPredicted RBP22.12■■□□□ 1.13
SF3A1-202ENST00000411423 NFXL1Q6ZNB6 911 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms