RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 KIF11P52732 1056 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 NKX1-1Q15270 411 aaPredicted RBP17.88■□□□□ 0.45
PCDH1-203ENST00000394536 SEC23AQ15436 765 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 KIAA0753Q2KHM9 967 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 CAPS2Q9BXY5 557 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 NDST4Q9H3R1 872 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 L1RE1Q9UN81 338 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 RTCBQ9Y3I0 505 aaKnown RBP17.88■□□□□ 0.45
PCDH1-203ENST00000394536 KLRK1P26718 216 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 USP14P54578 494 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 SFMBT2Q5VUG0 894 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 ADSSL1Q8N142 457 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 THAP9Q9H5L6 903 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 RGPD1P0DJD0 1748 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 ESYT3A0FGR9 886 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 PCP11498 1178 aaKnown RBP17.87■□□□□ 0.45
PCDH1-203ENST00000394536 PPFIA1Q13136 1202 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 FAM98CQ17RN3 349 aaKnown RBP17.87■□□□□ 0.45
PCDH1-203ENST00000394536 CDKAL1Q5VV42 579 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 NFRKBQ6P4R8 1299 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 IFT20Q8IY31 132 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 LACRTQ9GZZ8 138 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 PCDHA13Q9Y5I0 950 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 ADCY7P51828 1080 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 SH3RF3Q8TEJ3 882 aaPredicted RBP17.87■□□□□ 0.45
PCDH1-203ENST00000394536 UBLCP1Q8WVY7 318 aaPredicted RBP17.87■□□□□ 0.45
PCDH1-203ENST00000394536 GOLGA6L7A0A1B0GV03 622 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 RNF225M0QZC1 329 aaPredicted RBP17.87■□□□□ 0.45
PCDH1-203ENST00000394536 TCP1P17987 556 aaKnown RBP17.87■□□□□ 0.45
PCDH1-203ENST00000394536 EPB41L5Q9HCM4 733 aa17.87■□□□□ 0.45
PCDH1-203ENST00000394536 BSDC1Q9NW68 430 aaPredicted RBP17.87■□□□□ 0.45
PCDH1-203ENST00000394536 FMN2Q9NZ56 1722 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 NFAT5O94916 1531 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 POTEMA6NI47 508 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 KCNQ2O43526 872 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 PPP1R12BO60237 982 aaPredicted RBP17.86■□□□□ 0.45
PCDH1-203ENST00000394536 PLS1Q14651 629 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 NT5DC1Q5TFE4 455 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 MYOCDQ8IZQ8 938 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 TACC3Q9Y6A5 838 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 FAM237AA0A1B0GTK4 181 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 LRRIQ3A6PVS8 624 aaPredicted RBP17.86■□□□□ 0.45
PCDH1-203ENST00000394536 KCNK3O14649 394 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 RCAN1P53805 252 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 PMS1P54277 932 aaKnown RBP17.86■□□□□ 0.45
PCDH1-203ENST00000394536 CCDC65Q8IXS2 484 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 PPM1EQ8WY54 764 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 LARP4BQ92615 738 aaKnown RBP17.86■□□□□ 0.45
PCDH1-203ENST00000394536 MED15Q96RN5 788 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 KRT12Q99456 494 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 TMEM47Q9BQJ4 181 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 MTA3Q9BTC8 594 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 JRKLQ9Y4A0 524 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 PLEKP08567 350 aaPredicted RBP17.86■□□□□ 0.45
PCDH1-203ENST00000394536 INPP5BP32019 993 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 PPP1R2P41236 205 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 NSUN4Q96CB9 384 aaKnown RBP17.86■□□□□ 0.45
PCDH1-203ENST00000394536 SLC4A9Q96Q91 983 aa17.86■□□□□ 0.45
PCDH1-203ENST00000394536 SLF2Q8IX21 1173 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 PPANQ9NQ55 473 aaKnown RBP17.85■□□□□ 0.45
PCDH1-203ENST00000394536 TMEM260Q9NX78 707 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 PCDHA12Q9UN75 941 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 CNTNAP5Q8WYK1 1306 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 ZNF335Q9H4Z2 1342 aaPredicted RBP17.85■□□□□ 0.45
PCDH1-203ENST00000394536 TBCAO75347 108 aaKnown RBP17.85■□□□□ 0.45
PCDH1-203ENST00000394536 BTDP43251 543 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 MRPL12P52815 198 aaKnown RBP17.85■□□□□ 0.45
PCDH1-203ENST00000394536 MFSD14BQ5SR56 506 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 ADAMTS1Q9UHI8 967 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 CAPN11Q9UMQ6 739 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 CETN3O15182 167 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 FANCGO15287 622 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 SLC16A2P36021 539 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 TNNC1P63316 161 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 TMC4Q7Z404 712 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 ADAT2Q7Z6V5 191 aaKnown RBP17.85■□□□□ 0.45
PCDH1-203ENST00000394536 CCDC170Q8IYT3 715 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 TBC1D5Q92609 795 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 EHD2Q9NZN4 543 aa17.85■□□□□ 0.45
PCDH1-203ENST00000394536 GFPT1Q06210 699 aaPredicted RBP17.84■□□□□ 0.45
PCDH1-203ENST00000394536 LRRC1Q9BTT6 524 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 ASIC2Q16515 512 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 CEP85LQ5SZL2 805 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 PAXIP1Q6ZW49 1069 aaPredicted RBP17.84■□□□□ 0.45
PCDH1-203ENST00000394536 DGKHQ86XP1 1220 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 ELOA2Q8IYF1 753 aaPredicted RBP17.84■□□□□ 0.45
PCDH1-203ENST00000394536 RETREG2Q8NC44 543 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 LRRC53A6NM62 1247 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 EIF3CLB5ME19 914 aaKnown RBP17.84■□□□□ 0.45
PCDH1-203ENST00000394536 FAM26FQ5R3K3 315 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 MICALCLQ6ZW33 695 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 COG1Q8WTW3 980 aa17.84■□□□□ 0.45
PCDH1-203ENST00000394536 EIF3CQ99613 913 aaKnown RBP17.84■□□□□ 0.45
PCDH1-203ENST00000394536 FEZ2Q9UHY8 353 aaPredicted RBP17.84■□□□□ 0.45
PCDH1-203ENST00000394536 HEXIM1O94992 359 aaKnown RBP17.83■□□□□ 0.45
PCDH1-203ENST00000394536 RPS6KA1Q15418 735 aa17.83■□□□□ 0.45
PCDH1-203ENST00000394536 UBE2SQ16763 222 aa17.83■□□□□ 0.45
PCDH1-203ENST00000394536 RIOK1Q9BRS2 568 aaKnown RBP17.83■□□□□ 0.45
PCDH1-203ENST00000394536 NFU1Q9UMS0 254 aa17.83■□□□□ 0.45
PCDH1-203ENST00000394536 PACSIN2Q9UNF0 486 aaPredicted RBP17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms