RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 USP11P51784 963 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 UBE2SQ16763 222 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 TMEM266Q2M3C6 531 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 CNNM3Q8NE01 707 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 NAT10Q9H0A0 1025 aaKnown RBP20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 FLOT1O75955 427 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 CCDC174Q6PII3 467 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 SARM1Q6SZW1 724 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 MOXD1Q6UVY6 613 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 KRBA2Q6ZNG9 492 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 SAMD3Q8N6K7 520 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 C4orf32Q8N8J7 132 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 CDCA5Q96FF9 252 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 ANO3Q9BYT9 981 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 RPAP3Q9H6T3 665 aaPredicted RBP20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 EMILIN3Q9NT22 766 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 PPP1R9AQ9ULJ8 1098 aa20.59■□□□□ 0.89
CCDC88C-203ENST00000389856 PHIPQ8WWQ0 1821 aa20.58■□□□□ 0.89
CCDC88C-203ENST00000389856 WNT7AO00755 349 aa20.58■□□□□ 0.89
CCDC88C-203ENST00000389856 SNAP25P60880 206 aa20.58■□□□□ 0.89
CCDC88C-203ENST00000389856 EAPPQ56P03 285 aaPredicted RBP20.58■□□□□ 0.89
CCDC88C-203ENST00000389856 MCF2L2Q86YR7 1114 aa20.58■□□□□ 0.89
CCDC88C-203ENST00000389856 DCAF8L1A6NGE4 600 aa20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 GOLGA6L19H0YKK7 550 aa20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 GCOM1H8Y6P7 765 aaPredicted RBP20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 POLR2MP0CAP2 368 aa20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 CALCRLQ16602 461 aa20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 ARMC9Q7Z3E5 817 aa20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 LUZP1Q86V48 1076 aa20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 ANKRD13AQ8IZ07 590 aa20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 SYMPKQ92797 1274 aaKnown RBP20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 CCPG1Q9ULG6 757 aa20.57■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L15C9J2P7 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L13C9JLJ4 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L11C9JVI0 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L18D6R9N7 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L22D6RA61 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L17D6RBQ6 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L19D6RCP7 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L20D6RJB6 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 POLR2DO15514 142 aaKnown RBP20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 PLCB2Q00722 1185 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L24Q0WX57 530 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 PRKG1Q13976 671 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 VGLL4Q14135 290 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 TTLL12Q14166 644 aaPredicted RBP20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 USP17L6PQ6QN14 398 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 SAMD1Q6SPF0 538 aaPredicted RBP20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 LDHDQ86WU2 507 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 PLA2G4DQ86XP0 818 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 CEP57L1Q8IYX8 460 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 IQUBQ8NA54 791 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 DNAJC25Q9H1X3 360 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 FBXO28Q9NVF7 368 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 KIAA1468Q9P260 1216 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 RABGAP1Q9Y3P9 1069 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 AFG3L2Q9Y4W6 797 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 MYPNQ86TC9 1320 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 MEIS2O14770 477 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 MARCH6O60337 910 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 UBA7P41226 1012 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 GRIN1Q05586 938 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 IQCB1Q15051 598 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 SH3D19Q5HYK7 790 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 BPIFA3Q9BQP9 254 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 SLC38A10Q9HBR0 1119 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 MAP3K20Q9NYL2 800 aaKnown RBP20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 DDX25Q9UHL0 483 aaKnown RBP20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 SNCAIPQ9Y6H5 919 aa20.56■□□□□ 0.88
CCDC88C-203ENST00000389856 PAPPA2Q9BXP8 1791 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 UNCXA6NJT0 531 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 AP5Z1O43299 807 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 ZNF75DP51815 510 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 HMGCS2P54868 508 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 PPATQ06203 517 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 SPECC1Q5M775 1068 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 RASSF8Q8NHQ8 419 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 SPTLC3Q9NUV7 552 aa20.55■□□□□ 0.88
CCDC88C-203ENST00000389856 SREBF1P36956 1147 aa20.54■□□□□ 0.88
CCDC88C-203ENST00000389856 OAZ1P54368 228 aa20.54■□□□□ 0.88
CCDC88C-203ENST00000389856 ERO1BQ86YB8 467 aa20.54■□□□□ 0.88
CCDC88C-203ENST00000389856 CLEC11AQ9Y240 323 aa20.54■□□□□ 0.88
CCDC88C-203ENST00000389856 OTOFQ9HC10 1997 aa20.54■□□□□ 0.88
CCDC88C-203ENST00000389856 MYH7BA7E2Y1 1941 aa20.54■□□□□ 0.88
CCDC88C-203ENST00000389856 CYP3A7-CYP3A51PA0A087WV96 503 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 SMC2O95347 1197 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 SLFN14P0C7P3 912 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 CYP3A7P24462 503 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 ARHGAP4P98171 946 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 COG2Q14746 738 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 LONRF3Q496Y0 759 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 MRFAP1L1Q96HT8 127 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 TRIM5Q9C035 493 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 MAF1Q9H063 256 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 TMEM60Q9H2L4 133 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 HOXC10Q9NYD6 342 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 RBBP6Q7Z6E9 1792 aaKnown RBP20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 CFBP00751 764 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 FXR2P51116 673 aaKnown RBP eCLIP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms