RNA–Protein interactions for RNA: ENST00000368215.7

PTPRK-206, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 4,651 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-206ENST00000368215 USP17L15C9J2P7 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L13C9JLJ4 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L11C9JVI0 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L18D6R9N7 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L22D6RA61 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L17D6RBQ6 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L19D6RCP7 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L20D6RJB6 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 MMP10P09238 476 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 CCDC172P0C7W6 258 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L24Q0WX57 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L6PQ6QN14 398 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 NSMFQ6X4W1 530 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 SRGAP1Q7Z6B7 1085 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 HPS3Q969F9 1004 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 GJA10Q969M2 543 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 PANX2Q96RD6 677 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 NBPF3Q9H094 633 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 CUEDC2Q9H467 287 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 BARHL2Q9NY43 387 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 FMN2Q9NZ56 1722 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 CALUO43852 315 aaPredicted RBP9.37□□□□□ -0.91
PTPRK-206ENST00000368215 CYP2J2P51589 502 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 GABPB1Q06547 395 aaPredicted RBP9.37□□□□□ -0.91
PTPRK-206ENST00000368215 TTLL12Q14166 644 aaPredicted RBP9.37□□□□□ -0.91
PTPRK-206ENST00000368215 KLHL7Q8IXQ5 586 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 WDR24Q96S15 920 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 CSRNP1Q96S65 589 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 FAM217BQ9NTX9 383 aaPredicted RBP9.37□□□□□ -0.91
PTPRK-206ENST00000368215 GJA3Q9Y6H8 435 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 BCL9O00512 1426 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 CAMTA1Q9Y6Y1 1673 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 KDM3AQ9Y4C1 1321 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 CCDC169A6NNP5 214 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 ACTN4O43707 911 aaKnown RBP9.37□□□□□ -0.91
PTPRK-206ENST00000368215 GAS7O60861 476 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 NDUFA10O95299 355 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 WHAMMP3Q1A5X7 153 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 KIAA0753Q2KHM9 967 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 KRT27Q7Z3Y8 459 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 SH3GLB2Q9NR46 395 aa9.37□□□□□ -0.91
PTPRK-206ENST00000368215 CNTNAP5Q8WYK1 1306 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 EXOC3O60645 756 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 TDP2O95551 362 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 POTEJP0CG39 1038 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 AKR1B1P15121 316 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 ARHGAP44Q17R89 818 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 PRR5LQ6MZQ0 368 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 SND1Q7KZF4 910 aaKnown RBP eCLIP9.36□□□□□ -0.915e-6■□□□□ 9.5
PTPRK-206ENST00000368215 MB21D1Q8N884 522 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 CCDC17Q96LX7 622 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 AMNQ9BXJ7 453 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 PARD6BQ9BYG5 372 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 ARMCX3Q9UH62 379 aaPredicted RBP9.36□□□□□ -0.91
PTPRK-206ENST00000368215 GSTTP1A0A1W2PQM5 241 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 TUBBP07437 444 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 HOXA13P31271 388 aaPredicted RBP9.36□□□□□ -0.91
PTPRK-206ENST00000368215 GJC1P36383 396 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 RASSF7Q02833 373 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 RABGGTAQ92696 567 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 MXD3Q9BW11 206 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 STK32BQ9NY57 414 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 PCDHA6Q9UN73 950 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 PCDHA8Q9Y5H6 950 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 LTN1O94822 1766 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 USP17L10C9JJH3 530 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 BACH1O14867 736 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 CEP104O60308 925 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 FCER1AP12319 257 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 PPP4R3AQ6IN85 833 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 TMEM60Q9H2L4 133 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 MAGEF1Q9HAY2 307 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 SWAP70Q9UH65 585 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 HPSEQ9Y251 543 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 AFF2P51816 1311 aa9.36□□□□□ -0.91
PTPRK-206ENST00000368215 ZEB2O60315 1214 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 XRCC5P13010 732 aaKnown RBP9.35□□□□□ -0.91
PTPRK-206ENST00000368215 CXCR5P32302 372 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 PRKG1Q13976 671 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 TBC1D10BQ4KMP7 808 aaPredicted RBP9.35□□□□□ -0.91
PTPRK-206ENST00000368215 EARS2Q5JPH6 523 aaKnown RBP9.35□□□□□ -0.91
PTPRK-206ENST00000368215 TRIM31Q9BZY9 425 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 COA1Q9GZY4 146 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 DNAJC5Q9H3Z4 198 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 ABHD10Q9NUJ1 306 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 IBSPP21815 317 aaPredicted RBP9.35□□□□□ -0.91
PTPRK-206ENST00000368215 BRD3Q15059 726 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 SEC23AQ15436 765 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 RNF187Q5TA31 235 aaPredicted RBP9.35□□□□□ -0.91
PTPRK-206ENST00000368215 TTBK2Q6IQ55 1244 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 NEDD1Q8NHV4 660 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 LMBR1Q8WVP7 490 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 KANSL2Q9H9L4 492 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 PNMA6FA0A0J9YX94 578 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 GOLGA6L10A0A0M3HER8 536 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 RAD17O75943 681 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 TNFAIP3P21580 790 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 NR2F2P24468 414 aa9.35□□□□□ -0.91
PTPRK-206ENST00000368215 MRPS25P82663 173 aaKnown RBP9.35□□□□□ -0.91
PTPRK-206ENST00000368215 DPYDQ12882 1025 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms