RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 SEC23AQ15436 765 aa20.74■□□□□ 0.91
HDDC3-201ENST00000330334 FSCN1Q16658 493 aaKnown RBP20.74■□□□□ 0.91
HDDC3-201ENST00000330334 DUSP28Q4G0W2 176 aa20.74■□□□□ 0.91
HDDC3-201ENST00000330334 IFIT1BQ5T764 474 aaKnown RBP20.74■□□□□ 0.91
HDDC3-201ENST00000330334 FAM109BQ6ICB4 259 aaPredicted RBP20.74■□□□□ 0.91
HDDC3-201ENST00000330334 FBXO16Q8IX29 292 aaPredicted RBP20.74■□□□□ 0.91
HDDC3-201ENST00000330334 ADGRF4Q8IZF3 695 aa20.74■□□□□ 0.91
HDDC3-201ENST00000330334 LTBP2Q14767 1821 aa20.74■□□□□ 0.91
HDDC3-201ENST00000330334 B4DLN1 442 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 DYNC1LI2O43237 492 aaPredicted RBP20.73■□□□□ 0.91
HDDC3-201ENST00000330334 CYP21A2P08686 494 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 RAG1P15918 1043 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 CALML3P27482 149 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 MRPL12P52815 198 aaKnown RBP20.73■□□□□ 0.91
HDDC3-201ENST00000330334 PTH1RQ03431 593 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 CDC37Q16543 378 aaPredicted RBP20.73■□□□□ 0.91
HDDC3-201ENST00000330334 SLC30A10Q6XR72 485 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 KIAA1211Q6ZU35 1233 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 EEPD1Q7L9B9 569 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 SLC43A3Q8NBI5 491 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 VTI1AQ96AJ9 217 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 TBX21Q9UL17 535 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 DDX49Q9Y6V7 483 aaKnown RBP20.73■□□□□ 0.91
HDDC3-201ENST00000330334 ABCB11O95342 1321 aa20.73■□□□□ 0.91
HDDC3-201ENST00000330334 TIMP1P01033 207 aa20.72■□□□□ 0.91
HDDC3-201ENST00000330334 SHHQ15465 462 aa20.72■□□□□ 0.91
HDDC3-201ENST00000330334 DEFB123Q8N688 67 aa20.72■□□□□ 0.91
HDDC3-201ENST00000330334 WDR11Q9BZH6 1224 aa20.72■□□□□ 0.91
HDDC3-201ENST00000330334 CPVLQ9H3G5 476 aa20.72■□□□□ 0.91
HDDC3-201ENST00000330334 BEX3Q00994 111 aa20.71■□□□□ 0.91
HDDC3-201ENST00000330334 CYB5R4Q7L1T6 521 aa20.71■□□□□ 0.91
HDDC3-201ENST00000330334 MCF2L2Q86YR7 1114 aa20.71■□□□□ 0.91
HDDC3-201ENST00000330334 MAP4K1Q92918 833 aa20.71■□□□□ 0.91
HDDC3-201ENST00000330334 JMJD4Q9H9V9 463 aa20.71■□□□□ 0.91
HDDC3-201ENST00000330334 COL6A3P12111 3177 aa20.71■□□□□ 0.91
HDDC3-201ENST00000330334 NKRFO15226 690 aaKnown RBP eCLIP20.7■□□□□ 0.9
HDDC3-201ENST00000330334 PDE4DQ08499 809 aa20.7■□□□□ 0.9
HDDC3-201ENST00000330334 QRICH1Q2TAL8 776 aa20.7■□□□□ 0.9
HDDC3-201ENST00000330334 USH1GQ495M9 461 aa20.7■□□□□ 0.9
HDDC3-201ENST00000330334 C9orf50Q5SZB4 431 aa20.7■□□□□ 0.9
HDDC3-201ENST00000330334 CXCL17Q6UXB2 119 aa20.7■□□□□ 0.9
HDDC3-201ENST00000330334 FAM126BQ8IXS8 530 aa20.7■□□□□ 0.9
HDDC3-201ENST00000330334 MTMR8Q96EF0 704 aa20.7■□□□□ 0.9
HDDC3-201ENST00000330334 MRPL11Q9Y3B7 192 aaKnown RBP20.7■□□□□ 0.9
HDDC3-201ENST00000330334 LCTP09848 1927 aa20.7■□□□□ 0.9
HDDC3-201ENST00000330334 PALM3A6NDB9 673 aaPredicted RBP20.69■□□□□ 0.9
HDDC3-201ENST00000330334 TLR3O15455 904 aaKnown RBP20.69■□□□□ 0.9
HDDC3-201ENST00000330334 CD4P01730 458 aa20.69■□□□□ 0.9
HDDC3-201ENST00000330334 FPGSQ05932 587 aa20.69■□□□□ 0.9
HDDC3-201ENST00000330334 MFSD5Q6N075 450 aa20.69■□□□□ 0.9
HDDC3-201ENST00000330334 FBXO11Q86XK2 927 aa20.69■□□□□ 0.9
HDDC3-201ENST00000330334 NCOA7Q8NI08 942 aa20.69■□□□□ 0.9
HDDC3-201ENST00000330334 SCFD2Q8WU76 684 aa20.69■□□□□ 0.9
HDDC3-201ENST00000330334 MTMR10Q9NXD2 777 aa20.69■□□□□ 0.9
HDDC3-201ENST00000330334 MAD2L2Q9UI95 211 aa20.69■□□□□ 0.9
HDDC3-201ENST00000330334 LRRC37A2A6NM11 1700 aa20.68■□□□□ 0.9
HDDC3-201ENST00000330334 KLRF2D3W0D1 207 aa20.68■□□□□ 0.9
HDDC3-201ENST00000330334 E7EWF7 191 aa20.68■□□□□ 0.9
HDDC3-201ENST00000330334 ITGA7Q13683 1181 aa20.68■□□□□ 0.9
HDDC3-201ENST00000330334 TMEM63BQ5T3F8 832 aa20.68■□□□□ 0.9
HDDC3-201ENST00000330334 RALYLQ86SE5 291 aaKnown RBP20.68■□□□□ 0.9
HDDC3-201ENST00000330334 STAG2Q8N3U4 1231 aa20.68■□□□□ 0.9
HDDC3-201ENST00000330334 SYTL5Q8TDW5 730 aaPredicted RBP20.68■□□□□ 0.9
HDDC3-201ENST00000330334 NSUN6Q8TEA1 469 aaKnown RBP20.68■□□□□ 0.9
HDDC3-201ENST00000330334 IWS1Q96ST2 819 aa20.68■□□□□ 0.9
HDDC3-201ENST00000330334 MAP3K20Q9NYL2 800 aaKnown RBP20.68■□□□□ 0.9
HDDC3-201ENST00000330334 ERICH2A1L162 156 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 IFIT3O14879 490 aaKnown RBP20.67■□□□□ 0.9
HDDC3-201ENST00000330334 CPT1AP50416 773 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 SMAD3P84022 425 aaKnown RBP20.67■□□□□ 0.9
HDDC3-201ENST00000330334 GHRHRQ02643 423 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 TRAF1Q13077 416 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 SART3Q15020 963 aaKnown RBP20.67■□□□□ 0.9
HDDC3-201ENST00000330334 SAMD3Q8N6K7 520 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 AMNQ9BXJ7 453 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 VAT1LQ9HCJ6 419 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 POLR3EQ9NVU0 708 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 GRIN2DO15399 1336 aa20.67■□□□□ 0.9
HDDC3-201ENST00000330334 ZBTB5O15062 677 aa20.66■□□□□ 0.9
HDDC3-201ENST00000330334 DHX16O60231 1041 aaKnown RBP20.66■□□□□ 0.9
HDDC3-201ENST00000330334 PTGS1P23219 599 aa20.66■□□□□ 0.9
HDDC3-201ENST00000330334 EPHB4P54760 987 aa20.66■□□□□ 0.9
HDDC3-201ENST00000330334 PPP2R5BQ15173 497 aa20.66■□□□□ 0.9
HDDC3-201ENST00000330334 BRDTQ58F21 947 aaPredicted RBP20.66■□□□□ 0.9
HDDC3-201ENST00000330334 Q7L0L9 218 aa20.66■□□□□ 0.9
HDDC3-201ENST00000330334 TBC1D5Q92609 795 aa20.66■□□□□ 0.9
HDDC3-201ENST00000330334 MTA3Q9BTC8 594 aa20.66■□□□□ 0.9
HDDC3-201ENST00000330334 KPNA6O60684 536 aa20.65■□□□□ 0.9
HDDC3-201ENST00000330334 TROAPQ12815 778 aa20.65■□□□□ 0.9
HDDC3-201ENST00000330334 GRM4Q14833 912 aa20.65■□□□□ 0.9
HDDC3-201ENST00000330334 IGDCC4Q8TDY8 1250 aa20.65■□□□□ 0.9
HDDC3-201ENST00000330334 RIOX1Q9H6W3 641 aa20.65■□□□□ 0.9
HDDC3-201ENST00000330334 STXBP5LQ9Y2K9 1186 aa20.65■□□□□ 0.9
HDDC3-201ENST00000330334 RBM8AQ9Y5S9 174 aaKnown RBP20.65■□□□□ 0.9
HDDC3-201ENST00000330334 TAF6LQ9Y6J9 622 aa20.65■□□□□ 0.9
HDDC3-201ENST00000330334 A6NJR5 290 aa20.64■□□□□ 0.89
HDDC3-201ENST00000330334 HSD17B4P51659 736 aa20.64■□□□□ 0.89
HDDC3-201ENST00000330334 PURAQ00577 322 aaKnown RBP20.64■□□□□ 0.89
HDDC3-201ENST00000330334 PPIGQ13427 754 aaKnown RBP eCLIP20.64■□□□□ 0.89
HDDC3-201ENST00000330334 TTLL4Q14679 1199 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms