RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TOX2Q96NM4 488 aa22.83■■□□□ 1.25
LIME1-201ENST00000309546 MROH7Q68CQ1 1323 aa22.82■■□□□ 1.24
LIME1-201ENST00000309546 PARP1P09874 1014 aaKnown RBP22.82■■□□□ 1.24
LIME1-201ENST00000309546 PTH1RQ03431 593 aa22.82■■□□□ 1.24
LIME1-201ENST00000309546 FSCN1Q16658 493 aaKnown RBP22.82■■□□□ 1.24
LIME1-201ENST00000309546 TMEM63BQ5T3F8 832 aa22.82■■□□□ 1.24
LIME1-201ENST00000309546 IQSEC1Q6DN90 963 aa22.82■■□□□ 1.24
LIME1-201ENST00000309546 ADGRF4Q8IZF3 695 aa22.82■■□□□ 1.24
LIME1-201ENST00000309546 MORC4Q8TE76 937 aa22.82■■□□□ 1.24
LIME1-201ENST00000309546 TRDNQ13061 729 aa22.81■■□□□ 1.24
LIME1-201ENST00000309546 CXCL17Q6UXB2 119 aa22.81■■□□□ 1.24
LIME1-201ENST00000309546 CYB5R4Q7L1T6 521 aa22.81■■□□□ 1.24
LIME1-201ENST00000309546 MPHOSPH6Q99547 160 aaKnown RBP22.81■■□□□ 1.24
LIME1-201ENST00000309546 ARVCFO00192 962 aa22.8■■□□□ 1.24
LIME1-201ENST00000309546 NKX3-2P78367 333 aa22.8■■□□□ 1.24
LIME1-201ENST00000309546 PDE4DQ08499 809 aa22.8■■□□□ 1.24
LIME1-201ENST00000309546 VAT1LQ9HCJ6 419 aa22.8■■□□□ 1.24
LIME1-201ENST00000309546 U3KPZ7 1027 aaPredicted RBP22.8■■□□□ 1.24
LIME1-201ENST00000309546 LOC102724159A0A0B4J2E5 919 aa22.79■■□□□ 1.24
LIME1-201ENST00000309546 ZEB2O60315 1214 aa22.79■■□□□ 1.24
LIME1-201ENST00000309546 CYP21A2P08686 494 aa22.79■■□□□ 1.24
LIME1-201ENST00000309546 CDK7P50613 346 aa22.79■■□□□ 1.24
LIME1-201ENST00000309546 FPGSQ05932 587 aa22.79■■□□□ 1.24
LIME1-201ENST00000309546 PWP2Q15269 919 aaKnown RBP22.79■■□□□ 1.24
LIME1-201ENST00000309546 QRICH1Q2TAL8 776 aa22.79■■□□□ 1.24
LIME1-201ENST00000309546 WDR11Q9BZH6 1224 aa22.79■■□□□ 1.24
LIME1-201ENST00000309546 ABCB11O95342 1321 aa22.79■■□□□ 1.24
LIME1-201ENST00000309546 TLR3O15455 904 aaKnown RBP22.78■■□□□ 1.24
LIME1-201ENST00000309546 SEC23AQ15436 765 aa22.78■■□□□ 1.24
LIME1-201ENST00000309546 DUSP28Q4G0W2 176 aa22.78■■□□□ 1.24
LIME1-201ENST00000309546 RALYLQ86SE5 291 aaKnown RBP22.78■■□□□ 1.24
LIME1-201ENST00000309546 TBX21Q9UL17 535 aa22.78■■□□□ 1.24
LIME1-201ENST00000309546 SGSM2O43147 1006 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 CABYRO75952 493 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 EPHB4P54760 987 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 FAM126BQ8IXS8 530 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 STAG2Q8N3U4 1231 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 DNERQ8NFT8 737 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 RNPC3Q96LT9 517 aaKnown RBP22.77■■□□□ 1.24
LIME1-201ENST00000309546 PPP1R12CQ9BZL4 782 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 JMJD4Q9H9V9 463 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 Q9Y3F1 56 aa22.77■■□□□ 1.24
LIME1-201ENST00000309546 B4DLN1 442 aa22.76■■□□□ 1.23
LIME1-201ENST00000309546 TIMP1P01033 207 aa22.76■■□□□ 1.23
LIME1-201ENST00000309546 MRPL12P52815 198 aaKnown RBP22.76■■□□□ 1.23
LIME1-201ENST00000309546 ITGA7Q13683 1181 aa22.76■■□□□ 1.23
LIME1-201ENST00000309546 FBXO11Q86XK2 927 aa22.76■■□□□ 1.23
LIME1-201ENST00000309546 OR6J1Q8NGC5 347 aa22.76■■□□□ 1.23
LIME1-201ENST00000309546 TBC1D5Q92609 795 aa22.76■■□□□ 1.23
LIME1-201ENST00000309546 ERICH2A1L162 156 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 KLRF2D3W0D1 207 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 IFIT3O14879 490 aaKnown RBP22.75■■□□□ 1.23
LIME1-201ENST00000309546 EDNRBP24530 442 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 PSMC6P62333 389 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 PPP2R5BQ15173 497 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 RGS22Q8NE09 1264 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 NCOA7Q8NI08 942 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 FAM161BQ96MY7 647 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 MTMR10Q9NXD2 777 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 TAF6LQ9Y6J9 622 aa22.75■■□□□ 1.23
LIME1-201ENST00000309546 RBM47A0AV96 593 aaKnown RBP22.74■■□□□ 1.23
LIME1-201ENST00000309546 E7EWF7 191 aa22.74■■□□□ 1.23
LIME1-201ENST00000309546 CHST3Q7LGC8 479 aa22.74■■□□□ 1.23
LIME1-201ENST00000309546 MCF2L2Q86YR7 1114 aa22.74■■□□□ 1.23
LIME1-201ENST00000309546 MRPL11Q9Y3B7 192 aaKnown RBP22.74■■□□□ 1.23
LIME1-201ENST00000309546 MYL3P08590 195 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 WTAPQ15007 396 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 ZNF697Q5TEC3 545 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 MFSD5Q6N075 450 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 STOX1Q6ZVD7 989 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 SYTL5Q8TDW5 730 aaPredicted RBP22.73■■□□□ 1.23
LIME1-201ENST00000309546 SCFD2Q8WU76 684 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 COPS5Q92905 334 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 TAAR1Q96RJ0 339 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 AMNQ9BXJ7 453 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 COL20A1Q9P218 1284 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 MAD2L2Q9UI95 211 aa22.73■■□□□ 1.23
LIME1-201ENST00000309546 CD4P01730 458 aa22.72■■□□□ 1.23
LIME1-201ENST00000309546 CPT1AP50416 773 aa22.72■■□□□ 1.23
LIME1-201ENST00000309546 SART3Q15020 963 aaKnown RBP22.72■■□□□ 1.23
LIME1-201ENST00000309546 SENP2Q9HC62 589 aa22.72■■□□□ 1.23
LIME1-201ENST00000309546 POLR3EQ9NVU0 708 aa22.72■■□□□ 1.23
LIME1-201ENST00000309546 RBM8AQ9Y5S9 174 aaKnown RBP22.72■■□□□ 1.23
LIME1-201ENST00000309546 GRIN2DO15399 1336 aa22.72■■□□□ 1.23
LIME1-201ENST00000309546 KIAA1217Q5T5P2 1943 aa22.72■■□□□ 1.23
LIME1-201ENST00000309546 NKRFO15226 690 aaKnown RBP eCLIP22.71■■□□□ 1.239e-8■■□□□ 13.9
LIME1-201ENST00000309546 CFBP00751 764 aa22.71■■□□□ 1.23
LIME1-201ENST00000309546 TXNP10599 105 aaKnown RBP22.71■■□□□ 1.23
LIME1-201ENST00000309546 PPIGQ13427 754 aaKnown RBP eCLIP22.71■■□□□ 1.236e-9■■■■□ 19.6
LIME1-201ENST00000309546 TTLL4Q14679 1199 aa22.71■■□□□ 1.23
LIME1-201ENST00000309546 GRM4Q14833 912 aa22.71■■□□□ 1.23
LIME1-201ENST00000309546 BRDTQ58F21 947 aaPredicted RBP22.71■■□□□ 1.23
LIME1-201ENST00000309546 HOMER1Q86YM7 354 aa22.71■■□□□ 1.23
LIME1-201ENST00000309546 TMEM199Q8N511 208 aa22.71■■□□□ 1.23
LIME1-201ENST00000309546 SLC43A3Q8NBI5 491 aa22.71■■□□□ 1.23
LIME1-201ENST00000309546 NSUN6Q8TEA1 469 aaKnown RBP22.71■■□□□ 1.23
LIME1-201ENST00000309546 MAP4K1Q92918 833 aa22.71■■□□□ 1.23
LIME1-201ENST00000309546 GPHNQ9NQX3 736 aaPredicted RBP22.71■■□□□ 1.23
LIME1-201ENST00000309546 BAZ2BQ9UIF8 2168 aaKnown RBP22.7■■□□□ 1.23
LIME1-201ENST00000309546 PALM3A6NDB9 673 aaPredicted RBP22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms